Literature DB >> 25499665

Active-learning strategies in computer-assisted drug discovery.

Daniel Reker1, Gisbert Schneider2.   

Abstract

High-throughput compound screening is time and resource consuming, and considerable effort is invested into screening compound libraries, profiling, and selecting the most promising candidates for further testing. Active-learning methods assist the selection process by focusing on areas of chemical space that have the greatest chance of success while considering structural novelty. The core feature of these algorithms is their ability to adapt the structure-activity landscapes through feedback. Instead of full-deck screening, only focused subsets of compounds are tested, and the experimental readout is used to refine molecule selection for subsequent screening cycles. Once implemented, these techniques have the potential to reduce costs and save precious materials. Here, we provide a comprehensive overview of the various computational active-learning approaches and outline their potential for drug discovery.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25499665     DOI: 10.1016/j.drudis.2014.12.004

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  28 in total

1.  CADD medicine: design is the potion that can cure my disease.

Authors:  Eric S Manas; Darren V S Green
Journal:  J Comput Aided Mol Des       Date:  2017-01-09       Impact factor: 3.686

2.  Bayesian reaction optimization as a tool for chemical synthesis.

Authors:  Benjamin J Shields; Jason Stevens; Jun Li; Marvin Parasram; Farhan Damani; Jesus I Martinez Alvarado; Jacob M Janey; Ryan P Adams; Abigail G Doyle
Journal:  Nature       Date:  2021-02-03       Impact factor: 49.962

Review 3.  Automating drug discovery.

Authors:  Gisbert Schneider
Journal:  Nat Rev Drug Discov       Date:  2017-12-15       Impact factor: 84.694

4.  www.3d-qsar.com: a web portal that brings 3-D QSAR to all electronic devices-the Py-CoMFA web application as tool to build models from pre-aligned datasets.

Authors:  Rino Ragno
Journal:  J Comput Aided Mol Des       Date:  2019-10-08       Impact factor: 3.686

Review 5.  Therapeutic Potential of Spirooxindoles as Antiviral Agents.

Authors:  Na Ye; Haiying Chen; Eric A Wold; Pei-Yong Shi; Jia Zhou
Journal:  ACS Infect Dis       Date:  2016-05-05       Impact factor: 5.084

6.  Derivatization Design of Synthetically Accessible Space for Optimization: In Silico Synthesis vs Deep Generative Design.

Authors:  Gergely M Makara; László Kovács; István Szabó; Gábor Pőcze
Journal:  ACS Med Chem Lett       Date:  2021-01-07       Impact factor: 4.345

7.  Automated screening for small organic ligands using DNA-encoded chemical libraries.

Authors:  Willy Decurtins; Moreno Wichert; Raphael M Franzini; Fabian Buller; Michael A Stravs; Yixin Zhang; Dario Neri; Jörg Scheuermann
Journal:  Nat Protoc       Date:  2016-03-17       Impact factor: 13.491

8.  Combining Machine Learning and Computational Chemistry for Predictive Insights Into Chemical Systems.

Authors:  John A Keith; Valentin Vassilev-Galindo; Bingqing Cheng; Stefan Chmiela; Michael Gastegger; Klaus-Robert Müller; Alexandre Tkatchenko
Journal:  Chem Rev       Date:  2021-07-07       Impact factor: 60.622

Review 9.  Automation and data-driven design of polymer therapeutics.

Authors:  Rahul Upadhya; Shashank Kosuri; Matthew Tamasi; Travis A Meyer; Supriya Atta; Michael A Webb; Adam J Gormley
Journal:  Adv Drug Deliv Rev       Date:  2020-11-24       Impact factor: 15.470

10.  Combining generative artificial intelligence and on-chip synthesis for de novo drug design.

Authors:  Francesca Grisoni; Berend J H Huisman; Alexander L Button; Michael Moret; Kenneth Atz; Daniel Merk; Gisbert Schneider
Journal:  Sci Adv       Date:  2021-06-11       Impact factor: 14.136

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