Literature DB >> 25497333

Generation and structural validation of a library of diverse xyloglucan-derived oligosaccharides, including an update on xyloglucan nomenclature.

Sami T Tuomivaara1, Katsuro Yaoi2, Malcolm A O'Neill1, William S York3.   

Abstract

Xyloglucans are structurally complex plant cell wall polysaccharides that are involved in cell growth and expansion, energy metabolism, and signaling. Determining the structure-function relationships of xyloglucans would benefit from the availability of a comprehensive and structurally diverse collection of rigorously characterized xyloglucan oligosaccharides. Here, we present a workflow for the semi-preparative scale generation and purification of neutral and acidic xyloglucan oligosaccharides using a combination of enzymatic and chemical treatments and size-exclusion chromatography. Twenty-six of these oligosaccharides were purified to near homogeneity and their structures validated using a combination of matrix-assisted laser desorption/ionization mass spectrometry, high-performance anion exchange chromatography, and 1H nuclear magnetic resonance spectroscopy. Mass spectrometry and analytical chromatography were compared as methods for xyloglucan oligosaccharide quantification. 1H chemical shifts were assigned using two-dimensional correlation spectroscopy. A comprehensive update of the nomenclature describing xyloglucan side-chain structures is provided for reference.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Glycosyl hydrolase; Nuclear magnetic resonance spectroscopy; Oligosaccharide; Plant cell wall; Size-exclusion chromatography; Xyloglucan

Mesh:

Substances:

Year:  2014        PMID: 25497333     DOI: 10.1016/j.carres.2014.06.031

Source DB:  PubMed          Journal:  Carbohydr Res        ISSN: 0008-6215            Impact factor:   2.104


  40 in total

Review 1.  The devil lies in the details: how variations in polysaccharide fine-structure impact the physiology and evolution of gut microbes.

Authors:  Eric C Martens; Amelia G Kelly; Alexandra S Tauzin; Harry Brumer
Journal:  J Mol Biol       Date:  2014-07-12       Impact factor: 5.469

2.  Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74.

Authors:  Gregory Arnal; Peter J Stogios; Jathavan Asohan; Mohamed A Attia; Tatiana Skarina; Alexander Holm Viborg; Bernard Henrissat; Alexei Savchenko; Harry Brumer
Journal:  J Biol Chem       Date:  2019-07-19       Impact factor: 5.157

3.  Xyloglucan, galactomannan, glucuronoxylan, and rhamnogalacturonan I do not have identical structures in soybean root and root hair cell walls.

Authors:  Artur Muszyński; Malcolm A O'Neill; Easwaran Ramasamy; Sivakumar Pattathil; Utku Avci; Maria J Peña; Marc Libault; Md Shakhawat Hossain; Laurent Brechenmacher; William S York; Rommel M Barbosa; Michael G Hahn; Gary Stacey; Russell W Carlson
Journal:  Planta       Date:  2015-06-12       Impact factor: 4.116

4.  Identification of the Gene Encoding Isoprimeverose-producing Oligoxyloglucan Hydrolase in Aspergillus oryzae.

Authors:  Tomohiko Matsuzawa; Yasushi Mitsuishi; Akihiko Kameyama; Katsuro Yaoi
Journal:  J Biol Chem       Date:  2016-01-11       Impact factor: 5.157

5.  Automated glycan assembly of galactosylated xyloglucan oligosaccharides and their recognition by plant cell wall glycan-directed antibodies.

Authors:  Pietro Dallabernardina; Colin Ruprecht; Peter J Smith; Michael G Hahn; Breeanna R Urbanowicz; Fabian Pfrengle
Journal:  Org Biomol Chem       Date:  2017-12-06       Impact factor: 3.876

6.  Crystallographic insight into the evolutionary origins of xyloglucan endotransglycosylases and endohydrolases.

Authors:  Nicholas McGregor; Victor Yin; Ching-Chieh Tung; Filip Van Petegem; Harry Brumer
Journal:  Plant J       Date:  2017-02-11       Impact factor: 6.417

7.  The presence of fucogalactoxyloglucan and its synthesis in rice indicates conserved functional importance in plants.

Authors:  Lifeng Liu; Jonathan Paulitz; Markus Pauly
Journal:  Plant Physiol       Date:  2015-04-13       Impact factor: 8.340

Review 8.  Enzymatic degradation of xyloglucans by Aspergillus species: a comparative view of this genus.

Authors:  Tomohiko Matsuzawa; Akira Watanabe; Takahiro Shintani; Katsuya Gomi; Katsuro Yaoi
Journal:  Appl Microbiol Biotechnol       Date:  2021-03-24       Impact factor: 4.813

Review 9.  Polysaccharide degradation systems of the saprophytic bacterium Cellvibrio japonicus.

Authors:  Jeffrey G Gardner
Journal:  World J Microbiol Biotechnol       Date:  2016-06-04       Impact factor: 3.312

10.  RElative QUantitation Inferred by Evaluating Mixtures (REQUIEM).

Authors:  Sami T Tuomivaara; Paul Schliekelman; Alison V Nairn; Kelley W Moremen; William S York
Journal:  Anal Chim Acta       Date:  2017-10-04       Impact factor: 6.558

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