Literature DB >> 25494780

Resolving anisotropic distributions of correlated vibrational motion in protein hydration water.

Matthias Heyden1.   

Abstract

In this study, we analyze correlations of vibrational motion on the surface of a small globular protein and in its hydration shell. In contrast to single particle hydration water dynamics, which are perturbed by interactions with the protein solute only in the first few hydration layers, we find that correlated, collective motions extend into the surrounding solvent on a 10 Å length scale, specifically at far-infrared frequencies below 100 cm(-1). As a function of frequency, we analyze the distribution of correlated longitudinal motions in the three-dimensional environment of the protein solute, as well as in the vicinity of different protein-water interfaces. An anisotropic distribution of these correlations is observed, which is related to specific protein-water vibrations and interactions at the interfaces, as well as flexibilities of solvent exposed sites. Our results show that coupling of protein and water dynamics leaves a three-dimensional imprint in the collective dynamics of its hydration shell, and we discuss potential implications for biomolecular function, e.g., molecular recognition and binding, and the dynamical coupling of proteins to their native solvation environment.

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Year:  2014        PMID: 25494780     DOI: 10.1063/1.4896073

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Dynamics of hydration water in gelatin and hyaluronic acid hydrogels.

Authors:  Sotiria Kripotou; Konstantinos Zafeiris; Maria Culebras-Martínez; Gloria Gallego Ferrer; Apostolos Kyritsis
Journal:  Eur Phys J E Soft Matter       Date:  2019-08-27       Impact factor: 1.890

2.  Pressure effects on collective density fluctuations in water and protein solutions.

Authors:  Daniela Russo; Alessio Laloni; Alessandra Filabozzi; Matthias Heyden
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-09       Impact factor: 11.205

3.  On the ability of molecular dynamics simulation and continuum electrostatics to treat interfacial water molecules in protein-protein complexes.

Authors:  Guillaume Copie; Fabrizio Cleri; Ralf Blossey; Marc F Lensink
Journal:  Sci Rep       Date:  2016-12-01       Impact factor: 4.379

4.  Knowledge-based prediction of DNA hydration using hydrated dinucleotides as building blocks.

Authors:  Lada Biedermannová; Jiří Černý; Michal Malý; Michaela Nekardová; Bohdan Schneider
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-07-21       Impact factor: 5.699

  4 in total

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