Literature DB >> 25492990

The genus Bipolaris.

D S Manamgoda1, A Y Rossman2, L A Castlebury2, P W Crous3, H Madrid4, E Chukeatirote5, K D Hyde6.   

Abstract

The genus Bipolaris includes important plant pathogens with worldwide distribution. Species recognition in the genus has been uncertain due to the lack of molecular data from ex-type cultures as well as overlapping morphological characteristics. In this study, we revise the genus Bipolaris based on DNA sequence data derived from living cultures of fresh isolates, available ex-type cultures from worldwide collections and observation of type and additional specimens. Combined analyses of ITS, GPDH and TEF gene sequences were used to reconstruct the molecular phylogeny of the genus Bipolaris for species with living cultures. The GPDH gene is determined to be the best single marker for species of Bipolaris. Generic boundaries between Bipolaris and Curvularia are revised and presented in an updated combined ITS and GPDH phylogenetic tree. We accept 47 species in the genus Bipolaris and clarify the taxonomy, host associations, geographic distributions and species' synonymies. Modern descriptions and illustrations are provided for 38 species in the genus with notes provided for the other taxa when recent descriptions are available. Bipolaris cynodontis, B. oryzae, B. victoriae, B. yamadae and B. zeicola are epi- or neotypified and a lectotype is designated for B. stenospila. Excluded and doubtful species are listed with notes on taxonomy and phylogeny. Seven new combinations are introduced in the genus Curvularia to accomodate the species of Bipolaris transferred based on the phylogenetic analysis. A taxonomic key is provided for the morphological identification of species within the genus.

Entities:  

Keywords:  Brown spot of rice; Field crop diseases; Graminicolous fungi; Helminthosporoid genera; Pleosporales; Southern corn leaf blight; Taxonomy; molecular phylogeny

Year:  2014        PMID: 25492990      PMCID: PMC4255534          DOI: 10.1016/j.simyco.2014.10.002

Source DB:  PubMed          Journal:  Stud Mycol        ISSN: 0166-0616            Impact factor:   16.097


  32 in total

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Authors:  J W Taylor; D J Jacobson; S Kroken; T Kasuga; D M Geiser; D S Hibbett; M C Fisher
Journal:  Fungal Genet Biol       Date:  2000-10       Impact factor: 3.495

2.  An undescribed species of Helminthosporium on Sudan grass and sorghum.

Authors:  C L LEFEBVRE; H S SHERWIN
Journal:  Mycologia       Date:  1948 Nov-Dec       Impact factor: 2.696

3.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

4.  Pleosporales.

Authors:  Ying Zhang; Pedro W Crous; Conrad L Schoch; Kevin D Hyde
Journal:  Fungal Divers       Date:  2011-10-09       Impact factor: 20.372

5.  Porocercospora seminalis gen. et comb. nov., the causal organism of buffalograss false smut.

Authors:  Bimal S Amaradasa; Hugo Madrid; Johannes Z Groenewald; Pedro W Crous; Keenan Amundsen
Journal:  Mycologia       Date:  2014 Jan-Feb       Impact factor: 2.696

6.  Conversions of deoxyradicinin to radicinin and of radicinin to 3-epi-radicinin in the phytopathogenic fungus Bipolaris coicis.

Authors:  Masanobu Suzuki; Emi Sakuno; Atsushi Ishihara; Jun-Ichi Tamura; Hiromitsu Nakajima
Journal:  Phytochemistry       Date:  2011-12-16       Impact factor: 4.072

7.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

8.  Development and characterization of simple sequence repeats for Bipolaris sorokiniana and cross transferability to related species.

Authors:  Oluseyi L Fajolu; Phillip A Wadl; Andrea L Vu; Kimberly D Gwinn; Brian E Scheffler; Robert N Trigiano; Bonnie H Ownley
Journal:  Mycologia       Date:  2013-05-25       Impact factor: 2.696

9.  Fungal Planet description sheets: 128-153.

Authors:  P W Crous; R G Shivas; M J Wingfield; B A Summerell; A Y Rossman; J L Alves; G C Adams; R W Barreto; A Bell; M L Coutinho; S L Flory; G Gates; K R Grice; G E St J Hardy; N M Kleczewski; L Lombard; C M O Longa; G Louis-Seize; F Macedo; D P Mahoney; G Maresi; P M Martin-Sanchez; L Marvanová; A M Minnis; L N Morgado; M E Noordeloos; A J L Phillips; W Quaedvlieg; P G Ryan; C Saiz-Jimenez; K A Seifert; W J Swart; Y P Tan; J B Tanney; P Q Thu; S I R Videira; D M Walker; J Z Groenewald
Journal:  Persoonia       Date:  2012-12-20       Impact factor: 11.051

10.  A new dawn for the naming of fungi: impacts of decisions made in Melbourne in July 2011 on the future publication and regulation of fungal names.

Authors:  David L Hawksworth
Journal:  IMA Fungus       Date:  2011-11-11       Impact factor: 3.515

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  40 in total

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Authors:  Kai-Ge Xu; Yu-Mei Jiang; Yang-Kun Li; Qiao-Qiao Xu; Ji-Shan Niu; Xin-Xin Zhu; Qiao-Yun Li
Journal:  Indian J Microbiol       Date:  2018-01-24       Impact factor: 2.461

2.  Genera of phytopathogenic fungi: GOPHY 1.

Authors:  Y Marin-Felix; J Z Groenewald; L Cai; Q Chen; S Marincowitz; I Barnes; K Bensch; U Braun; E Camporesi; U Damm; Z W de Beer; A Dissanayake; J Edwards; A Giraldo; M Hernández-Restrepo; K D Hyde; R S Jayawardena; L Lombard; J Luangsa-Ard; A R McTaggart; A Y Rossman; M Sandoval-Denis; M Shen; R G Shivas; Y P Tan; E J van der Linde; M J Wingfield; A R Wood; J Q Zhang; Y Zhang; P W Crous
Journal:  Stud Mycol       Date:  2017-05-05       Impact factor: 16.097

3.  Genera of phytopathogenic fungi: GOPHY 2.

Authors:  Y Marin-Felix; M Hernández-Restrepo; M J Wingfield; A Akulov; A J Carnegie; R Cheewangkoon; D Gramaje; J Z Groenewald; V Guarnaccia; F Halleen; L Lombard; J Luangsa-Ard; S Marincowitz; A Moslemi; L Mostert; W Quaedvlieg; R K Schumacher; C F J Spies; R Thangavel; P W J Taylor; A M Wilson; B D Wingfield; A R Wood; P W Crous
Journal:  Stud Mycol       Date:  2018-05-01       Impact factor: 16.097

4.  Genera of phytopathogenic fungi: GOPHY 3.

Authors:  Y Marin-Felix; M Hernández-Restrepo; I Iturrieta-González; D García; J Gené; J Z Groenewald; L Cai; Q Chen; W Quaedvlieg; R K Schumacher; P W J Taylor; C Ambers; G Bonthond; J Edwards; S A Krueger-Hadfield; J J Luangsa-Ard; L Morton; A Moslemi; M Sandoval-Denis; Y P Tan; R Thangavel; N Vaghefi; R Cheewangkoon; P W Crous
Journal:  Stud Mycol       Date:  2019-06-13       Impact factor: 16.097

5.  Sera of Peruvians with fever of unknown origins include viral nucleic acids from non-vertebrate hosts.

Authors:  Tung Gia Phan; Juana Del Valle Mendoza; Mohammadreza Sadeghi; Eda Altan; Xutao Deng; Eric Delwart
Journal:  Virus Genes       Date:  2017-10-17       Impact factor: 2.332

6.  Development of a Multilocus Sequence Typing System for Medically Relevant Bipolaris Species.

Authors:  Cau D Pham; Anne E Purfield; Robert Fader; Neil Pascoe; Shawn R Lockhart
Journal:  J Clin Microbiol       Date:  2015-07-22       Impact factor: 5.948

7.  Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?

Authors:  Robert Lücking; M Catherine Aime; Barbara Robbertse; Andrew N Miller; Hiran A Ariyawansa; Takayuki Aoki; Gianluigi Cardinali; Pedro W Crous; Irina S Druzhinina; David M Geiser; David L Hawksworth; Kevin D Hyde; Laszlo Irinyi; Rajesh Jeewon; Peter R Johnston; Paul M Kirk; Elaine Malosso; Tom W May; Wieland Meyer; Maarja Öpik; Vincent Robert; Marc Stadler; Marco Thines; Duong Vu; Andrey M Yurkov; Ning Zhang; Conrad L Schoch
Journal:  IMA Fungus       Date:  2020-07-10       Impact factor: 3.515

8.  Whole-genome sequence analysis of Bipolaris sorokiniana infecting wheat in India and characterization of ToxA gene in different isolates as pathogenicity determinants.

Authors:  Rashmi Aggarwal; Shweta Agarwal; Sapna Sharma; Malkhan Singh Gurjar; Bishnu Maya Bashyal; Atmakuri Ramakrishna Rao; Sarika Sahu; Prachi Jain; Mahender Singh Saharan
Journal:  3 Biotech       Date:  2022-06-20       Impact factor: 2.893

9.  Fungal Systematics and Evolution: FUSE 5.

Authors:  Jie Song; Jun-Feng Liang; Mehdi Mehrabi-Koushki; Irmgard Krisai-Greilhuber; Barkat Ali; Vinod Kumar Bhatt; Agustín Cerna-Mendoza; Bin Chen; Zai-Xiong Chen; Hong-Long Chu; Mike Anderson Corazon-Guivin; Gladstone Alves da Silva; André De Kesel; Bálint Dima; Francesco Dovana; Reza Farokhinejad; Guliano Ferisin; Juan Carlos Guerrero-Abad; Ting Guo; Li-Hong Han; Sobia Ilyas; Alfredo Justo; Abdul Nasir Khalid; Sadigheh Khodadadi-Pourarpanahi; Tai-Hui Li; Chao Liu; Marilinda Lorenzini; Jun-Kun Lu; Abdul Samad Mumtaz; Fritz Oehl; Xue-Yu Pan; Viktor Papp; Wu Qian; Abdul Razaq; Kamal C Semwal; Li-Zhou Tang; Xue-Lian Tian; Adela Vallejos-Tapullima; Nicolaas A van der Merwe; Sheng-Kun Wang; Chao-Qun Wang; Rui-Heng Yang; Fei Yu; Giacomo Zapparoli; Ming Zhang; Vladimir Antonín; André Aptroot; Ali Aslan; Arghya Banerjee; Subrata Chatterjee; Alden C Dirks; Leila Ebrahimi; Khalil-Berdi Fotouhifar; Youbert Ghosta; Lyudmila B Kalinina; Dilara Karahan; Jingyu Liu; Mrinal Kumar Maiti; Abhirup Mookherjee; Partha Sarathi Nath; Birendranath Panja; Jayanta Saha; Hana Ševčíková; Hermann Voglmayr; Kenan Yazıcı; Danny Haelewaters
Journal:  Sydowia       Date:  2019-12-23

10.  Multi-Gene Phylogeny and Morphology Reveal Haplohelminthosporium gen. nov. and Helminthosporiella gen. nov. Associated with Palms in Thailand and A Checklist for Helminthosporium Reported Worldwide.

Authors:  Sirinapa Konta; Kevin D Hyde; Samantha C Karunarathna; Ausana Mapook; Chanokned Senwanna; Lucas A P Dauner; Chandrika M Nanayakkara; Jianchu Xu; Saowaluck Tibpromma; Saisamorn Lumyong
Journal:  Life (Basel)       Date:  2021-05-19
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