Literature DB >> 25491565

Synthesis of uniformly deuterated n-dodecyl-β-D-maltoside (d39-DDM) for solubilization of membrane proteins in TROSY NMR experiments.

Kazumi Hiruma-Shimizu1, Arnout P Kalverda, Peter J F Henderson, Steve W Homans, Simon G Patching.   

Abstract

This work reports the first synthesis of uniformly deuterated n-dodecyl-β-D-maltoside (d39-DDM). DDM is a mild non-ionic detergent often used in the extraction and purification of membrane proteins and for solubilizing them in experimental studies of their structure, dynamics and binding of ligands. We required d39-DDM for solubilizing large α-helical membrane proteins in samples for [(15)N-(1)H]TROSY (transverse relaxation-optimized spectroscopy) NMR experiments to achieve the highest sensitivity and best resolved spectra possible. Our synthesis of d39-DDM used d7-D-glucose and d25-n-dodecanol to introduce deuterium labelling into both the maltoside and dodecyl moieties, respectively. Two glucose molecules, one converted to a glycosyl acceptor with a free C4 hydroxyl group and one converted to a glycosyl donor substituted at C1 with a bromine in the α-configuration, were coupled together with an α(1 → 4) glycosidic bond to give maltose, which was then coupled with n-dodecanol by its substitution of a C1 bromine in the α-configuration to give DDM. (1)H NMR spectra were used to confirm a high level of deuteration in the synthesized d39-DDM and to demonstrate its use in eliminating interfering signals from TROSY NMR spectra of a 52-kDa sugar transport protein solubilized in DDM.
Copyright © 2014 John Wiley & Sons, Ltd.

Entities:  

Keywords:  NMR; detergent; deuteration; membrane proteins; n-dodecyl-β-d-maltoside

Mesh:

Substances:

Year:  2014        PMID: 25491565     DOI: 10.1002/jlcr.3249

Source DB:  PubMed          Journal:  J Labelled Comp Radiopharm        ISSN: 0362-4803            Impact factor:   1.921


  2 in total

1.  Contrast-Matching Detergent in Small-Angle Neutron Scattering Experiments for Membrane Protein Structural Analysis and Ab Initio Modeling.

Authors:  Ryan C Oliver; Swe-Htet Naing; Kevin L Weiss; Sai Venkatesh Pingali; Raquel L Lieberman; Volker S Urban
Journal:  J Vis Exp       Date:  2018-10-21       Impact factor: 1.355

2.  Unprecedented Convergent Synthesis of Sugar-Functionalization of Phosphinic Acids under Metal-Free Conditions.

Authors:  Moaz M Abdou; Paul M O'Neill; Eric Amigues; Magdalini Matziari
Journal:  ACS Omega       Date:  2022-06-16
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.