Literature DB >> 25487336

The ancient Yakuts: a population genetic enigma.

Christine Keyser1, Clémence Hollard2, Angela Gonzalez3, Jean-Luc Fausser3, Eric Rivals4, Anatoly Nikolayevich Alexeev5, Alexandre Riberon6, Eric Crubézy7, Bertrand Ludes8.   

Abstract

This study is part of an ongoing project aiming at determining the ethnogenesis of an eastern Siberian ethnic group, the Yakuts, on the basis of archaeological excavations carried out over a period of 10 years in three regions of Yakutia: Central Yakutia, the Vilyuy River basin and the Verkhoyansk area. In this study, genetic analyses were carried out on skeletal remains from 130 individuals of unknown ancestry dated mainly from the fifteenth to the nineteenth century AD. Kinship studies were conducted using sets of commercially available autosomal and Y-chromosomal short tandem repeats (STRs) along with hypervariable region I sequences of the mitochondrial DNA. An unexpected and intriguing finding of this work was that the uniparental marker systems did not always corroborate results from autosomal DNA analyses; in some cases, false-positive relationships were observed. These discrepancies revealed that 15 autosomal STR loci are not sufficient to discriminate between first degree relatives and more distantly related individuals in our ancient Yakut sample. The Y-STR analyses led to similar conclusions, because the current Y-STR panels provided the limited resolution of the paternal lineages.
© 2014 The Author(s) Published by the Royal Society. All rights reserved.

Entities:  

Keywords:  Yakuts; ancient DNA; kinship; short tandem repeats

Mesh:

Substances:

Year:  2015        PMID: 25487336      PMCID: PMC4275892          DOI: 10.1098/rstb.2013.0385

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  24 in total

1.  Nuclear and mitochondrial DNA analysis of a 2,000-year-old necropolis in the Egyin Gol Valley of Mongolia.

Authors:  Christine Keyser-Tracqui; Eric Crubézy; Bertrand Ludes
Journal:  Am J Hum Genet       Date:  2003-07-10       Impact factor: 11.025

2.  Population genetics of 17 Y-chromosomal STR loci in Yakutia.

Authors:  Catherine Thèves; Patricia Balaresque; Larissa E Evdokimova; Innokentevich V Timofeev; Anatoly N Alekseev; André Sevin; Eric Crubézy; Morgane Gibert
Journal:  Forensic Sci Int Genet       Date:  2010-02-23       Impact factor: 4.882

3.  Methods for the study of ancient DNA.

Authors:  Christine Keyser-Tracqui; Bertrand Ludes
Journal:  Methods Mol Biol       Date:  2005

4.  Molecular genetic analysis of 400-year-old human remains found in two Yakut burial sites.

Authors:  François-Xavier Ricaut; Sergei Kolodesnikov; Christine Keyser-Tracqui; Anatoly Nikoyevich Alekseev; Eric Crubézy; Bertrand Ludes
Journal:  Am J Phys Anthropol       Date:  2006-01       Impact factor: 2.868

5.  STR typing of ancient DNA extracted from hair shafts of Siberian mummies.

Authors:  S Amory; C Keyser; E Crubézy; B Ludes
Journal:  Forensic Sci Int       Date:  2006-07-12       Impact factor: 2.395

6.  [Comparative analysis of mitochondrial DNA of Yakuts and other Asian populations].

Authors:  L A Tarskaia; P Melton
Journal:  Genetika       Date:  2006-12

7.  [The origin of Yakuts: analysis of Y-chromosome haplotypes].

Authors:  V N Khar'kov; V A Stepanov; O F Medvedev; M G Spiridonova; N R Maksimova; A N Nogovitsyna; V P Puzyrev
Journal:  Mol Biol (Mosk)       Date:  2008 Mar-Apr

8.  Developmental validation of the PowerPlex® Y23 System: a single multiplex Y-STR analysis system for casework and database samples.

Authors:  Jonelle M Thompson; Margaret M Ewing; William E Frank; Jill J Pogemiller; Craig A Nolde; D Jody Koehler; Alyssandra M Shaffer; Dawn R Rabbach; Patricia M Fulmer; Cynthia J Sprecher; Douglas R Storts
Journal:  Forensic Sci Int Genet       Date:  2013-01-20       Impact factor: 4.882

9.  Strong genetic admixture in the Altai at the Middle Bronze Age revealed by uniparental and ancestry informative markers.

Authors:  Clémence Hollard; Christine Keyser; Pierre-Henri Giscard; Turbat Tsagaan; Noost Bayarkhuu; Jan Bemmann; Eric Crubézy; Bertrand Ludes
Journal:  Forensic Sci Int Genet       Date:  2014-06-02       Impact factor: 4.882

10.  DNA commission of the International Society of Forensic Genetics: Recommendations on the evaluation of STR typing results that may include drop-out and/or drop-in using probabilistic methods.

Authors:  P Gill; L Gusmão; H Haned; W R Mayr; N Morling; W Parson; L Prieto; M Prinz; H Schneider; P M Schneider; B S Weir
Journal:  Forensic Sci Int Genet       Date:  2012-08-03       Impact factor: 4.882

View more
  9 in total

1.  Introduction. Ancient DNA: the first three decades.

Authors:  Erika Hagelberg; Michael Hofreiter; Christine Keyser
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

2.  Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments.

Authors:  Pablo Librado; Clio Der Sarkissian; Luca Ermini; Mikkel Schubert; Hákon Jónsson; Anders Albrechtsen; Matteo Fumagalli; Melinda A Yang; Cristina Gamba; Andaine Seguin-Orlando; Cecilie D Mortensen; Bent Petersen; Cindi A Hoover; Belen Lorente-Galdos; Artem Nedoluzhko; Eugenia Boulygina; Svetlana Tsygankova; Markus Neuditschko; Vidhya Jagannathan; Catherine Thèves; Ahmed H Alfarhan; Saleh A Alquraishi; Khaled A S Al-Rasheid; Thomas Sicheritz-Ponten; Ruslan Popov; Semyon Grigoriev; Anatoly N Alekseev; Edward M Rubin; Molly McCue; Stefan Rieder; Tosso Leeb; Alexei Tikhonov; Eric Crubézy; Montgomery Slatkin; Tomas Marques-Bonet; Rasmus Nielsen; Eske Willerslev; Juha Kantanen; Egor Prokhortchouk; Ludovic Orlando
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-23       Impact factor: 11.205

3.  The first horse herders and the impact of early Bronze Age steppe expansions into Asia.

Authors:  Peter de Barros Damgaard; Rui Martiniano; Jack Kamm; J Víctor Moreno-Mayar; Guus Kroonen; Michaël Peyrot; Gojko Barjamovic; Simon Rasmussen; Claus Zacho; Nurbol Baimukhanov; Victor Zaibert; Victor Merz; Arjun Biddanda; Ilja Merz; Valeriy Loman; Valeriy Evdokimov; Emma Usmanova; Brian Hemphill; Andaine Seguin-Orlando; Fulya Eylem Yediay; Inam Ullah; Karl-Göran Sjögren; Katrine Højholt Iversen; Jeremy Choin; Constanza de la Fuente; Melissa Ilardo; Hannes Schroeder; Vyacheslav Moiseyev; Andrey Gromov; Andrei Polyakov; Sachihiro Omura; Süleyman Yücel Senyurt; Habib Ahmad; Catriona McKenzie; Ashot Margaryan; Abdul Hameed; Abdul Samad; Nazish Gul; Muhammad Hassan Khokhar; O I Goriunova; Vladimir I Bazaliiskii; John Novembre; Andrzej W Weber; Ludovic Orlando; Morten E Allentoft; Rasmus Nielsen; Kristian Kristiansen; Martin Sikora; Alan K Outram; Richard Durbin; Eske Willerslev
Journal:  Science       Date:  2018-05-09       Impact factor: 47.728

4.  Fatty Acid Content and Composition of the Yakutian Horses and Their Main Food Source: Living in Extreme Winter Conditions.

Authors:  Klim A Petrov; Lyubov V Dudareva; Vasiliy V Nokhsorov; Kirill N Stoyanov; Olesia N Makhutova
Journal:  Biomolecules       Date:  2020-02-17

5.  The genetic legacy of legendary and historical Siberian chieftains.

Authors:  Vincent Zvénigorosky; Sylvie Duchesne; Liubomira Romanova; Patrice Gérard; Christiane Petit; Michel Petit; Anatoly Alexeev; Olga Melnichuk; Angéla Gonzalez; Jean-Luc Fausser; Aisen Solovyev; Georgii Romanov; Nikolay Barashkov; Sardana Fedorova; Bertrand Ludes; Eric Crubézy; Christine Keyser
Journal:  Commun Biol       Date:  2020-10-16

6.  A novel nonlinear dimension reduction approach to infer population structure for low-coverage sequencing data.

Authors:  Miao Zhang; Yiwen Liu; Hua Zhou; Joseph Watkins; Jin Zhou
Journal:  BMC Bioinformatics       Date:  2021-06-26       Impact factor: 3.169

7.  Medieval mummies of Zeleny Yar burial ground in the Arctic Zone of Western Siberia.

Authors:  Sergey Mikhailovich Slepchenko; Alexander Vasilyevich Gusev; Evgenia Olegovna Svyatova; Jong Ha Hong; Chang Seok Oh; Do Seon Lim; Dong Hoon Shin
Journal:  PLoS One       Date:  2019-01-25       Impact factor: 3.240

8.  Pilot Screening of Cell-Free mtDNA in NIPT: Quality Control, Variant Calling, and Haplogroup Determination.

Authors:  Alisa Morshneva; Polina Kozyulina; Elena Vashukova; Olga Tarasenko; Natalia Dvoynova; Anastasia Chentsova; Olga Talantova; Alexander Koroteev; Dmitrii Ivanov; Elena Serebryakova; Tatyana Ivashchenko; Aitalina Sukhomyasova; Nadezhda Maksimova; Olesya Bespalova; Igor Kogan; Vladislav Baranov; Andrey Glotov
Journal:  Genes (Basel)       Date:  2021-05-14       Impact factor: 4.096

9.  At the Origins of Tobacco-Smoking and Tea Consumption in a Virgin Population (Yakutia, 1650-1900 A.D.): Comparison of Pharmacological, Histological, Economic and Cultural Data.

Authors:  Matthias Macé; Camille Richeval; Ameline Alcouffe; Liubomira Romanova; Patrice Gérard; Sylvie Duchesne; Catherine Cannet; Irina Boyarskikh; Annie Géraut; Vincent Zvénigorosky; Darya Nikolaeva; Charles Stepanoff; Delphine Allorge; Michele Debrenne; Norbert Telmon; Bertrand Ludes; Anatoly Alexeev; Jean-Michel Gaulier; Eric Crubézy
Journal:  Biology (Basel)       Date:  2021-12-03
  9 in total

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