Literature DB >> 25487215

A rapid, simple, and inexpensive method for the preparation of strand-specific RNA-Seq libraries.

Arthur G Hunt1.   

Abstract

High-throughput sequencing of short cDNA tags, or RNA-Seq, has become a staple of genome-wide gene expression studies in plants. RNA-Seq libraries necessarily contain tags that correspond to the mRNA-poly(A) junction, or polyadenylation site, and thus may be mined for data that can help study alternative polyadenylation. This report presents a simple, rapid, and inexpensive method for preparing strand-specific RNA-Seq libraries from varying quantities of total RNA.

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Year:  2015        PMID: 25487215     DOI: 10.1007/978-1-4939-2175-1_17

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  9 in total

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Journal:  Nucleic Acids Res       Date:  2017-09-06       Impact factor: 16.971

2.  Histone Deacetylase 11 Knockdown Blocks Larval Development and Metamorphosis in the Red Flour Beetle, Tribolium castaneum.

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3.  Transcriptional response of honey bee (Apis mellifera) to differential nutritional status and Nosema infection.

Authors:  Farida Azzouz-Olden; Arthur Hunt; Gloria DeGrandi-Hoffman
Journal:  BMC Genomics       Date:  2018-08-22       Impact factor: 3.969

4.  Transcriptome Landscape Variation in the Genus Thymus.

Authors:  Aboozar Soorni; Tahereh Borna; Ali Alemardan; Manohar Chakrabarti; Arthur G Hunt; Aureliano Bombarely
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5.  The transcriptome of Balamuthia mandrillaris trophozoites for structure-guided drug design.

Authors:  Isabelle Q Phan; Christopher A Rice; Justin Craig; Rooksana E Noorai; Jacquelyn R McDonald; Sandhya Subramanian; Logan Tillery; Lynn K Barrett; Vijay Shankar; James C Morris; Wesley C Van Voorhis; Dennis E Kyle; Peter J Myler
Journal:  Sci Rep       Date:  2021-11-04       Impact factor: 4.379

6.  Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana.

Authors:  Xiao-Ning Zhang; Yifei Shi; Jordan J Powers; Nikhil B Gowda; Chong Zhang; Heba M M Ibrahim; Hannah B Ball; Samuel L Chen; Hua Lu; Stephen M Mount
Journal:  BMC Genomics       Date:  2017-10-11       Impact factor: 3.969

7.  Transcriptome analysis of drought-tolerant sorghum genotype SC56 in response to water stress reveals an oxidative stress defense strategy.

Authors:  Farida Azzouz-Olden; Arthur G Hunt; Randy Dinkins
Journal:  Mol Biol Rep       Date:  2020-04-17       Impact factor: 2.316

8.  A Broad Spectrum Racemase in Pseudomonas putida KT2440 Plays a Key Role in Amino Acid Catabolism.

Authors:  Atanas D Radkov; Luke A Moe
Journal:  Front Microbiol       Date:  2018-06-29       Impact factor: 5.640

9.  Elucidation of resistance signaling and identification of powdery mildew resistant mapping loci (ClaPMR2) during watermelon-Podosphaera xanthii interaction using RNA-Seq and whole-genome resequencing approach.

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Journal:  Sci Rep       Date:  2020-08-20       Impact factor: 4.996

  9 in total

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