Literature DB >> 25486191

Construction of synthetic nucleoli and what it tells us about propagation of sub-nuclear domains through cell division.

Alice Grob1, Brian McStay.   

Abstract

The cell nucleus is functionally compartmentalized into numerous membraneless and dynamic, yet defined, bodies. The cell cycle inheritance of these nuclear bodies (NBs) is poorly understood at the molecular level. In higher eukaryotes, their propagation is challenged by cell division through an "open" mitosis, where the nuclear envelope disassembles along with most NBs. A deeper understanding of the mechanisms involved can be achieved using the engineering principles of synthetic biology to construct artificial NBs. Successful biogenesis of such synthetic NBs demonstrates knowledge of the basic mechanisms involved. Application of this approach to the nucleolus, a paradigm of nuclear organization, has highlighted a key role for mitotic bookmarking in the cell cycle propagation of NBs.

Keywords:  1°, primary; 2°, secondary; CBs, Cajal bodies; CDK, cyclin-dependent kinase; DFC, dense fibrillar component; DJ, distal junction; FCs, fibrillar centers; GC, granular component; HLBs, histone locus bodies; HMG, high mobility group; IGS, intergenic spacers; NBs, nuclear bodies; NORs, nucleolar organizer regions; Nucleolar Organizer Region (NOR); PJ, proximal junction; PML, promyelocytic leukemia; PNBs, pre-nucleolar bodies; TFs, transcription factors; UBF; UBF, Upstream binding factor; XEn, Xenopus enhancer; cell cycle; mitotic bookmarking; neo-NOR; neonucleoli; nuclear bodies; nucleolus; pol, RNA polymerase; pre-rRNA, precursor rRNA; pseudo-NOR; rDNA, ribosomal genes; rRNA, ribosomal RNA; RNP, ribonucleoprotein; synthetic biology; t-UTPs, transcription U 3 proteins

Mesh:

Year:  2014        PMID: 25486191      PMCID: PMC4614152          DOI: 10.4161/15384101.2014.949124

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  58 in total

1.  A kinetic framework for a mammalian RNA polymerase in vivo.

Authors:  Miroslav Dundr; Urs Hoffmann-Rohrer; Qiyue Hu; Ingrid Grummt; Lawrence I Rothblum; Robert D Phair; Tom Misteli
Journal:  Science       Date:  2002-11-22       Impact factor: 47.728

Review 2.  Nuclear speckles: a model for nuclear organelles.

Authors:  Angus I Lamond; David L Spector
Journal:  Nat Rev Mol Cell Biol       Date:  2003-08       Impact factor: 94.444

3.  Cajal body proteins SMN and Coilin show differential dynamic behaviour in vivo.

Authors:  Judith E Sleeman; Laura Trinkle-Mulcahy; Alan R Prescott; Stephen C Ogg; Angus I Lamond
Journal:  J Cell Sci       Date:  2003-04-01       Impact factor: 5.285

4.  Location of ribosomal DNA in the human chromosome complement.

Authors:  A S Henderson; D Warburton; K C Atwood
Journal:  Proc Natl Acad Sci U S A       Date:  1972-11       Impact factor: 11.205

5.  Enhancer-like properties of the 60/81 bp elements in the ribosomal gene spacer of Xenopus laevis.

Authors:  P Labhart; R H Reeder
Journal:  Cell       Date:  1984-05       Impact factor: 41.582

6.  The Xenopus ribosomal gene enhancers bind an essential polymerase I transcription factor, xUBF.

Authors:  C S Pikaard; B McStay; M C Schultz; S P Bell; R H Reeder
Journal:  Genes Dev       Date:  1989-11       Impact factor: 11.361

7.  Short-range DNA looping by the Xenopus HMG-box transcription factor, xUBF.

Authors:  D P Bazett-Jones; B Leblanc; M Herfort; T Moss
Journal:  Science       Date:  1994-05-20       Impact factor: 47.728

8.  Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins.

Authors:  H M Jantzen; A Admon; S P Bell; R Tjian
Journal:  Nature       Date:  1990-04-26       Impact factor: 49.962

9.  xUBF and Rib 1 are both required for formation of a stable polymerase I promoter complex in X. laevis.

Authors:  B McStay; C H Hu; C S Pikaard; R H Reeder
Journal:  EMBO J       Date:  1991-08       Impact factor: 11.598

10.  Localization of the RNA polymerase I transcription factor hUBF during the cell cycle.

Authors:  P Roussel; C André; C Masson; G Géraud; D Hernandez-Verdun
Journal:  J Cell Sci       Date:  1993-02       Impact factor: 5.285

View more
  10 in total

Review 1.  Coordinating cell cycle-regulated histone gene expression through assembly and function of the Histone Locus Body.

Authors:  Robert J Duronio; William F Marzluff
Journal:  RNA Biol       Date:  2017-01-06       Impact factor: 4.652

Review 2.  Close to the edge: Heterochromatin at the nucleolar and nuclear peripheries.

Authors:  Aizhan Bizhanova; Paul D Kaufman
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2020-12-08       Impact factor: 4.490

Review 3.  Determinants of mammalian nucleolar architecture.

Authors:  Katherine I Farley; Yulia Surovtseva; Janie Merkel; Susan J Baserga
Journal:  Chromosoma       Date:  2015-02-12       Impact factor: 2.919

Review 4.  Nucleolar organizer regions: genomic 'dark matter' requiring illumination.

Authors:  Brian McStay
Journal:  Genes Dev       Date:  2016-07-15       Impact factor: 11.361

5.  Small chromosomal regions position themselves autonomously according to their chromatin class.

Authors:  Harmen J G van de Werken; Josien C Haan; Yana Feodorova; Dominika Bijos; An Weuts; Koen Theunis; Sjoerd J B Holwerda; Wouter Meuleman; Ludo Pagie; Katharina Thanisch; Parveen Kumar; Heinrich Leonhardt; Peter Marynen; Bas van Steensel; Thierry Voet; Wouter de Laat; Irina Solovei; Boris Joffe
Journal:  Genome Res       Date:  2017-03-24       Impact factor: 9.043

6.  Trnp1 organizes diverse nuclear membrane-less compartments in neural stem cells.

Authors:  Miriam Esgleas; Sven Falk; Ignasi Forné; Marc Thiry; Sonia Najas; Sirui Zhang; Aina Mas-Sanchez; Arie Geerlof; Dierk Niessing; Zefeng Wang; Axel Imhof; Magdalena Götz
Journal:  EMBO J       Date:  2020-07-06       Impact factor: 11.598

7.  Super-resolution in situ analysis of active ribosomal DNA chromatin organization in the nucleolus.

Authors:  Andreas Maiser; Stefan Dillinger; Gernot Längst; Lothar Schermelleh; Heinrich Leonhardt; Attila Németh
Journal:  Sci Rep       Date:  2020-05-04       Impact factor: 4.379

8.  Subcellular localization of the porcine deltacoronavirus nucleocapsid protein.

Authors:  Zhen Ding; Suxian Luo; Wang Gong; Leyi Wang; Nengshui Ding; Jun Chen; Jiajia Chen; Ting Wang; Yu Ye; Deping Song; Lingbao Kong; Jinghua Zhang; Yuxing Tang
Journal:  Virus Genes       Date:  2020-09-17       Impact factor: 2.332

9.  Nucleolar sub-compartments in motion during rRNA synthesis inhibition: Contraction of nucleolar condensed chromatin and gathering of fibrillar centers are concomitant.

Authors:  Pavel Tchelidze; Aassif Benassarou; Hervé Kaplan; Marie-Françoise O'Donohue; Laurent Lucas; Christine Terryn; Levan Rusishvili; Giorgi Mosidze; Nathalie Lalun; Dominique Ploton
Journal:  PLoS One       Date:  2017-11-30       Impact factor: 3.240

10.  Self-interaction of NPM1 modulates multiple mechanisms of liquid-liquid phase separation.

Authors:  Diana M Mitrea; Jaclyn A Cika; Christopher B Stanley; Amanda Nourse; Paulo L Onuchic; Priya R Banerjee; Aaron H Phillips; Cheon-Gil Park; Ashok A Deniz; Richard W Kriwacki
Journal:  Nat Commun       Date:  2018-02-26       Impact factor: 14.919

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.