Literature DB >> 27248002

Prions, amyloids, and RNA: Pieces of a puzzle.

Anton A Nizhnikov1,2,3, Kirill S Antonets1,2, Stanislav A Bondarev1, Sergey G Inge-Vechtomov1,2, Irina L Derkatch4.   

Abstract

Amyloids are protein aggregates consisting of fibrils rich in β-sheets. Growth of amyloid fibrils occurs by the addition of protein molecules to the tip of an aggregate with a concurrent change of a conformation. Thus, amyloids are self-propagating protein conformations. In certain cases these conformations are transmissible / infectious; they are known as prions. Initially, amyloids were discovered as pathological extracellular deposits occurring in different tissues and organs. To date, amyloids and prions have been associated with over 30 incurable diseases in humans and animals. However, a number of recent studies demonstrate that amyloids are also functionally involved in a variety of biological processes, from biofilm formation by bacteria, to long-term memory in animals. Interestingly, amyloid-forming proteins are highly overrepresented among cellular factors engaged in all stages of mRNA life cycle: from transcription and translation, to storage and degradation. Here we review rapidly accumulating data on functional and pathogenic amyloids associated with mRNA processing, and discuss possible significance of prion and amyloid networks in the modulation of key cellular functions.

Entities:  

Keywords:  Amyloid; CPEB; Prion; Pub1; S. cerevisiae; Sup35; Tia1; yeast

Mesh:

Substances:

Year:  2016        PMID: 27248002      PMCID: PMC4981203          DOI: 10.1080/19336896.2016.1181253

Source DB:  PubMed          Journal:  Prion        ISSN: 1933-6896            Impact factor:   3.931


  175 in total

1.  Quantification of beta-sheet amyloid fibril structures with thioflavin T.

Authors:  H LeVine
Journal:  Methods Enzymol       Date:  1999       Impact factor: 1.600

2.  The Huntington's disease protein interacts with p53 and CREB-binding protein and represses transcription.

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Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

3.  Rnq1: an epigenetic modifier of protein function in yeast.

Authors:  N Sondheimer; S Lindquist
Journal:  Mol Cell       Date:  2000-01       Impact factor: 17.970

Review 4.  Review: history of the amyloid fibril.

Authors:  J D Sipe; A S Cohen
Journal:  J Struct Biol       Date:  2000-06       Impact factor: 2.867

5.  Prion domain initiation of amyloid formation in vitro from native Ure2p.

Authors:  K L Taylor; N Cheng; R W Williams; A C Steven; R B Wickner
Journal:  Science       Date:  1999-02-26       Impact factor: 47.728

6.  Structural and functional role of the disulfide bridges in the hydrophobin SC3.

Authors:  M L de Vocht; I Reviakine; H A Wösten; A Brisson; J G Wessels; G T Robillard
Journal:  J Biol Chem       Date:  2000-09-15       Impact factor: 5.157

Review 7.  Turning genes off by Ssn6-Tup1: a conserved system of transcriptional repression in eukaryotes.

Authors:  R L Smith; A D Johnson
Journal:  Trends Biochem Sci       Date:  2000-07       Impact factor: 13.807

8.  Expanded polyglutamine stretches interact with TAFII130, interfering with CREB-dependent transcription.

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Journal:  Nat Genet       Date:  2000-09       Impact factor: 38.330

9.  Amyloid formation by mutant huntingtin: threshold, progressivity and recruitment of normal polyglutamine proteins.

Authors:  C C Huang; P W Faber; F Persichetti; V Mittal; J P Vonsattel; M E MacDonald; J F Gusella
Journal:  Somat Cell Mol Genet       Date:  1998-07

10.  RNA-binding proteins TIA-1 and TIAR link the phosphorylation of eIF-2 alpha to the assembly of mammalian stress granules.

Authors:  N L Kedersha; M Gupta; W Li; I Miller; P Anderson
Journal:  J Cell Biol       Date:  1999-12-27       Impact factor: 10.539

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  14 in total

Review 1.  Biomolecular Assemblies: Moving from Observation to Predictive Design.

Authors:  Corey J Wilson; Andreas S Bommarius; Julie A Champion; Yury O Chernoff; David G Lynn; Anant K Paravastu; Chen Liang; Ming-Chien Hsieh; Jennifer M Heemstra
Journal:  Chem Rev       Date:  2018-10-03       Impact factor: 60.622

2.  Mammalian amyloidogenic proteins promote prion nucleation in yeast.

Authors:  Pavithra Chandramowlishwaran; Meng Sun; Kristin L Casey; Andrey V Romanyuk; Anastasiya V Grizel; Julia V Sopova; Aleksandr A Rubel; Carmen Nussbaum-Krammer; Ina M Vorberg; Yury O Chernoff
Journal:  J Biol Chem       Date:  2018-01-12       Impact factor: 5.157

3.  Human cyclophilin 40 unravels neurotoxic amyloids.

Authors:  Jeremy D Baker; Lindsey B Shelton; Dali Zheng; Filippo Favretto; Bryce A Nordhues; April Darling; Leia E Sullivan; Zheying Sun; Parth K Solanki; Mackenzie D Martin; Amirthaa Suntharalingam; Jonathan J Sabbagh; Stefan Becker; Eckhard Mandelkow; Vladimir N Uversky; Markus Zweckstetter; Chad A Dickey; John Koren; Laura J Blair
Journal:  PLoS Biol       Date:  2017-06-27       Impact factor: 8.029

4.  Aβ seeds and prions: How close the fit?

Authors:  Jay Rasmussen; Mathias Jucker; Lary C Walker
Journal:  Prion       Date:  2017-06-28       Impact factor: 3.931

5.  Predicting Amyloidogenic Proteins in the Proteomes of Plants.

Authors:  Kirill S Antonets; Anton A Nizhnikov
Journal:  Int J Mol Sci       Date:  2017-10-16       Impact factor: 5.923

6.  Amyloidogenic Propensities of Ribosomal S1 Proteins: Bioinformatics Screening and Experimental Checking.

Authors:  Sergei Y Grishin; Evgeniya I Deryusheva; Andrey V Machulin; Olga M Selivanova; Anna V Glyakina; Elena Y Gorbunova; Leila G Mustaeva; Vyacheslav N Azev; Valentina V Rekstina; Tatyana S Kalebina; Alexey K Surin; Oxana V Galzitskaya
Journal:  Int J Mol Sci       Date:  2020-07-22       Impact factor: 5.923

Review 7.  Amyloids: The History of Toxicity and Functionality.

Authors:  Elmira I Yakupova; Liya G Bobyleva; Sergey A Shumeyko; Ivan M Vikhlyantsev; Alexander G Bobylev
Journal:  Biology (Basel)       Date:  2021-05-01

8.  M60-like metalloprotease domain of the Escherichia coli YghJ protein forms amyloid fibrils.

Authors:  Mikhail V Belousov; Stanislav A Bondarev; Anastasiia O Kosolapova; Kirill S Antonets; Anna I Sulatskaya; Maksim I Sulatsky; Galina A Zhouravleva; Irina M Kuznetsova; Konstantin K Turoverov; Anton A Nizhnikov
Journal:  PLoS One       Date:  2018-01-30       Impact factor: 3.240

9.  Amyloid and the origin of life: self-replicating catalytic amyloids as prebiotic informational and protometabolic entities.

Authors:  Carl Peter J Maury
Journal:  Cell Mol Life Sci       Date:  2018-03-17       Impact factor: 9.261

10.  Comparative functional analysis of proteins containing low-complexity predicted amyloid regions.

Authors:  Bandana Kumari; Ravindra Kumar; Vipin Chauhan; Manish Kumar
Journal:  PeerJ       Date:  2018-10-30       Impact factor: 2.984

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