Literature DB >> 25485423

Myocardial infarct segmentation and reconstruction from 2D late-gadolinium enhanced magnetic resonance images.

Eranga Ukwatta, Jing Yuan, Wu Qiu, Katherine C Wu, Natalia Trayanova, Fijoy Vadakkumpadan.   

Abstract

In this paper, we propose a convex optimization-based algorithm for segmenting myocardial infarct from clinical 2D late-gadolinium enhanced magnetic resonance (LGE-MR) images. Previously segmented left ventricular (LV) myocardium was used to define a region of interest for the infarct segmentation. The infarct segmentation problem was formulated as a continuous min-cut problem, which was solved using its dual formulation, the continuous max-flow (CMF). Bhattacharyya intensity distribution matching was used as the data term, where the prior intensity distributions were computed based on a training data set LGE-MR images from seven patients. The algorithm was parallelized and implemented in a graphics processing unit for reduced computation time. Three-dimensional (3D) volumes of the infarcts were then reconstructed using an interpolation technique we developed based on logarithm of odds. The algorithm was validated using LGE-MR images from 47 patients (309 slices) by comparing computed 2D segmentations and 3D reconstructions to manually generated ones. In addition, the developed algorithm was compared to several previously reported segmentation techniques. The CMF algorithm outperformed the previously reported methods in terms of Dice similarity coefficient.

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Year:  2014        PMID: 25485423      PMCID: PMC4319214          DOI: 10.1007/978-3-319-10470-6_69

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  8 in total

1.  Image segmentation using active contours driven by the Bhattacharyya gradient flow.

Authors:  Oleg Michailovich; Yogesh Rathi; Allen Tannenbaum
Journal:  IEEE Trans Image Process       Date:  2007-11       Impact factor: 10.856

2.  Using the logarithm of odds to define a vector space on probabilistic atlases.

Authors:  Kilian M Pohl; John Fisher; Sylvain Bouix; Martha Shenton; Robert W McCarley; W Eric L Grimson; Ron Kikinis; William M Wells
Journal:  Med Image Anal       Date:  2007-06-22       Impact factor: 8.545

3.  Heart disease and stroke statistics--2014 update: a report from the American Heart Association.

Authors:  Alan S Go; Dariush Mozaffarian; Véronique L Roger; Emelia J Benjamin; Jarett D Berry; Michael J Blaha; Shifan Dai; Earl S Ford; Caroline S Fox; Sheila Franco; Heather J Fullerton; Cathleen Gillespie; Susan M Hailpern; John A Heit; Virginia J Howard; Mark D Huffman; Suzanne E Judd; Brett M Kissela; Steven J Kittner; Daniel T Lackland; Judith H Lichtman; Lynda D Lisabeth; Rachel H Mackey; David J Magid; Gregory M Marcus; Ariane Marelli; David B Matchar; Darren K McGuire; Emile R Mohler; Claudia S Moy; Michael E Mussolino; Robert W Neumar; Graham Nichol; Dilip K Pandey; Nina P Paynter; Matthew J Reeves; Paul D Sorlie; Joel Stein; Amytis Towfighi; Tanya N Turan; Salim S Virani; Nathan D Wong; Daniel Woo; Melanie B Turner
Journal:  Circulation       Date:  2013-12-18       Impact factor: 29.690

4.  Interactive Hierarchical-Flow Segmentation of Scar Tissue From Late-Enhancement Cardiac MR Images.

Authors:  Martin Rajchl; Jing Yuan; James A White; Eranga Ukwatta; John Stirrat; Cyrus M S Nambakhsh; Feng P Li; Terry M Peters
Journal:  IEEE Trans Med Imaging       Date:  2013-09-20       Impact factor: 10.048

5.  Infarct tissue heterogeneity by magnetic resonance imaging identifies enhanced cardiac arrhythmia susceptibility in patients with left ventricular dysfunction.

Authors:  André Schmidt; Clerio F Azevedo; Alan Cheng; Sandeep N Gupta; David A Bluemke; Thomas K Foo; Gary Gerstenblith; Robert G Weiss; Eduardo Marbán; Gordon F Tomaselli; João A C Lima; Katherine C Wu
Journal:  Circulation       Date:  2007-03-26       Impact factor: 29.690

6.  Transmural extent of acute myocardial infarction predicts long-term improvement in contractile function.

Authors:  K M Choi; R J Kim; G Gubernikoff; J D Vargas; M Parker; R M Judd
Journal:  Circulation       Date:  2001-09-04       Impact factor: 29.690

7.  Evaluation of techniques for the quantification of myocardial scar of differing etiology using cardiac magnetic resonance.

Authors:  Andrew S Flett; Jonathan Hasleton; Christopher Cook; Derek Hausenloy; Giovanni Quarta; Cono Ariti; Vivek Muthurangu; James C Moon
Journal:  JACC Cardiovasc Imaging       Date:  2011-02

8.  Feasibility of image-based simulation to estimate ablation target in human ventricular arrhythmia.

Authors:  Hiroshi Ashikaga; Hermenegild Arevalo; Fijoy Vadakkumpadan; Robert C Blake; Jason D Bayer; Saman Nazarian; M Muz Zviman; Harikrishna Tandri; Ronald D Berger; Hugh Calkins; Daniel A Herzka; Natalia A Trayanova; Henry R Halperin
Journal:  Heart Rhythm       Date:  2013-04-19       Impact factor: 6.343

  8 in total
  6 in total

Review 1.  How computer simulations of the human heart can improve anti-arrhythmia therapy.

Authors:  Natalia A Trayanova; Kelly C Chang
Journal:  J Physiol       Date:  2016-01-18       Impact factor: 5.182

Review 2.  How personalized heart modeling can help treatment of lethal arrhythmias: A focus on ventricular tachycardia ablation strategies in post-infarction patients.

Authors:  Natalia A Trayanova; Ashish N Doshi; Adityo Prakosa
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2020-01-09

3.  Multi-scale Modeling of the Cardiovascular System: Disease Development, Progression, and Clinical Intervention.

Authors:  Yanhang Zhang; Victor H Barocas; Scott A Berceli; Colleen E Clancy; David M Eckmann; Marc Garbey; Ghassan S Kassab; Donna R Lochner; Andrew D McCulloch; Roger Tran-Son-Tay; Natalia A Trayanova
Journal:  Ann Biomed Eng       Date:  2016-05-02       Impact factor: 3.934

4.  Myocardial Infarct Segmentation From Magnetic Resonance Images for Personalized Modeling of Cardiac Electrophysiology.

Authors:  Natalia A Trayanova; Fijoy Vadakkumpadan; Eranga Ukwatta; Hermenegild Arevalo; Kristina Li; Jing Yuan; Wu Qiu; Peter Malamas; Katherine C Wu
Journal:  IEEE Trans Med Imaging       Date:  2015-12-25       Impact factor: 10.048

5.  Image-based reconstruction of three-dimensional myocardial infarct geometry for patient-specific modeling of cardiac electrophysiology.

Authors:  Eranga Ukwatta; Hermenegild Arevalo; Martin Rajchl; James White; Farhad Pashakhanloo; Adityo Prakosa; Daniel A Herzka; Elliot McVeigh; Albert C Lardo; Natalia A Trayanova; Fijoy Vadakkumpadan
Journal:  Med Phys       Date:  2015-08       Impact factor: 4.071

6.  Image-based Reconstruction of 3D Myocardial Infarct Geometry for Patient Specific Applications.

Authors:  Eranga Ukwatta; Martin Rajchl; James White; Farhad Pashakhanloo; Daniel A Herzka; Elliot McVeigh; Albert C Lardo; Natalia Trayanova; Fijoy Vadakkumpadan
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2015-03-20
  6 in total

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