Literature DB >> 25484839

Crystal structure of (E)-3-(5-bromo-2-hydroxy-phen-yl)acryl-aldehyde.

Sung-Gon Kim1.   

Abstract

The title compound, C9H7BrO2, displays a trans configuration with respect to the C=C double bond and is essentially planar [maximum deviation from the least-squares plane through all non-H atoms = 0.056 (4) Å]. The vinyl-aldehyde group adopts an extended conformation wih a C-C-C-C torsion angle of 179.7 (4)°. In the crystal, mol-ecules are linked by classical O-H⋯O and weak C-H⋯O hydrogen bonds into a three-dimensional supra-molecular network.

Entities:  

Keywords:  crystal structure; hydrogen bonding; three-dimensional supra­molecular network 2-hy­droxy­cinnamaldehydes; trans configuration; vinyl­aldehyde group

Year:  2014        PMID: 25484839      PMCID: PMC4257279          DOI: 10.1107/S1600536814023708

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of 2-hy­droxy­cinnamaldehydes, see: Kim et al. (2004 ▶); Zeiter & Rose (2009 ▶). For their biological activity, see: Kwon et al. (1996 ▶); Lee et al. (1999 ▶); Ka et al. (2003 ▶); Gan et al. (2009 ▶); Han et al. (2011 ▶). For their synthetic applications, see: Cabrera et al. (2008 ▶); Zu et al. (2009 ▶); Choi & Kim (2010 ▶); Lee & Kim (2011 ▶); Lee et al. (2011 ▶). For related structures, see: Kang & Kim (2013 ▶).

Experimental

Crystal data

C9H7BrO2 M = 227.06 Orthorhombic, a = 12.1230 (11) Å b = 15.0901 (14) Å c = 4.8763 (4) Å V = 892.06 (14) Å3 Z = 4 Mo Kα radiation μ = 4.56 mm−1 T = 200 K 0.41 × 0.35 × 0.15 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.256, T max = 0.548 6031 measured reflections 2052 independent reflections 1683 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.086 S = 1.16 2052 reflections 110 parameters 1 restraint H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.58 e Å−3 Absolute structure: Flack (1983 ▶) Absolute structure parameter: 0.021 (19)

Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXTL and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814023708/gw2149sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814023708/gw2149Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814023708/gw2149Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814023708/gw2149fig1.tif A view of the mol­ecular structure of the title compound, showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. Click here for additional data file. . DOI: 10.1107/S1600536814023708/gw2149fig2.tif A partial view of the crystal packing of the title compound. Hydrogen atoms have been omitted for clarity. CCDC reference: 1031276 Additional supporting information: crystallographic information; 3D view; checkCIF report
C9H7BrO2F(000) = 448
Mr = 227.06Dx = 1.691 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 3701 reflections
a = 12.1230 (11) Åθ = 2.7–28.2°
b = 15.0901 (14) ŵ = 4.56 mm1
c = 4.8763 (4) ÅT = 200 K
V = 892.06 (14) Å3Block, pale yellow
Z = 40.41 × 0.35 × 0.15 mm
Bruker SMART CCD area-detector diffractometer2052 independent reflections
Radiation source: fine-focus sealed tube1683 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
phi and ω scansθmax = 28.3°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −16→13
Tmin = 0.256, Tmax = 0.548k = −20→19
6031 measured reflectionsl = −6→5
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H-atom parameters constrained
wR(F2) = 0.086w = 1/[σ2(Fo2) + (0.P)2 + 1.2584P] where P = (Fo2 + 2Fc2)/3
S = 1.16(Δ/σ)max = 0.001
2052 reflectionsΔρmax = 0.48 e Å3
110 parametersΔρmin = −0.58 e Å3
1 restraintAbsolute structure: Flack (1983)
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.021 (19)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.5560 (4)0.3452 (3)0.1499 (9)0.0325 (9)
O10.4596 (3)0.3084 (2)0.0686 (7)0.0452 (8)
H10.40910.32360.17660.068*
C20.6537 (4)0.3149 (3)0.0237 (8)0.0295 (9)
C30.7531 (3)0.3521 (3)0.1065 (9)0.0305 (9)
H30.82000.33360.02290.037*
C40.7550 (3)0.4153 (3)0.3081 (10)0.0352 (10)
Br10.89425 (3)0.45978 (3)0.4305 (2)0.04971 (16)
C50.6611 (3)0.4457 (2)0.4299 (17)0.0350 (8)
H50.66450.49050.56630.042*
C60.5603 (4)0.4099 (3)0.3509 (8)0.0359 (11)
H60.49420.42990.43510.043*
C70.6470 (4)0.2463 (3)−0.1865 (9)0.0350 (9)
H70.57640.2211−0.21990.042*
C80.7312 (4)0.2157 (3)−0.3365 (10)0.0339 (9)
H80.80320.2391−0.31080.041*
C90.7127 (3)0.1470 (3)−0.5372 (13)0.0368 (10)
H90.64030.1234−0.55240.044*
O20.7830 (3)0.1175 (2)−0.6872 (7)0.0426 (8)
U11U22U33U12U13U23
C10.022 (2)0.038 (2)0.038 (2)−0.0013 (17)0.0002 (17)−0.0013 (19)
O10.0208 (16)0.062 (2)0.053 (2)−0.0040 (15)0.0017 (14)−0.0239 (17)
C20.026 (2)0.033 (2)0.029 (2)0.0007 (16)0.0008 (15)−0.0015 (16)
C30.021 (2)0.032 (2)0.039 (2)0.0016 (16)0.0024 (17)0.0006 (18)
C40.026 (2)0.035 (2)0.045 (2)−0.0046 (17)−0.0061 (18)−0.001 (2)
Br10.0290 (2)0.0552 (3)0.0649 (3)−0.00854 (18)−0.0047 (3)−0.0132 (3)
C50.0267 (18)0.0353 (18)0.043 (2)−0.0007 (14)0.002 (4)−0.007 (3)
C60.034 (2)0.038 (2)0.036 (3)0.0056 (17)0.0033 (17)−0.0051 (18)
C70.031 (2)0.035 (2)0.039 (2)−0.0026 (18)0.0010 (19)−0.0035 (19)
C80.028 (2)0.035 (2)0.039 (2)0.0007 (18)−0.0009 (19)−0.0018 (18)
C90.029 (2)0.0342 (19)0.047 (3)−0.0032 (15)0.008 (2)−0.002 (2)
O20.0374 (19)0.0407 (17)0.050 (2)0.0004 (14)0.0109 (14)−0.0110 (15)
C1—O11.353 (5)C5—C61.391 (6)
C1—C61.384 (6)C5—H50.9500
C1—C21.411 (6)C6—H60.9500
O1—H10.8400C7—C81.339 (6)
C2—C31.389 (6)C7—H70.9500
C2—C71.459 (6)C8—C91.443 (7)
C3—C41.370 (6)C8—H80.9500
C3—H30.9500C9—O21.208 (6)
C4—C51.363 (6)C9—H90.9500
C4—Br11.913 (4)
O1—C1—C6122.0 (4)C4—C5—H5120.6
O1—C1—C2117.6 (4)C6—C5—H5120.6
C6—C1—C2120.4 (4)C1—C6—C5120.2 (4)
C1—O1—H1109.5C1—C6—H6119.9
C3—C2—C1118.1 (4)C5—C6—H6119.9
C3—C2—C7122.6 (4)C8—C7—C2125.9 (4)
C1—C2—C7119.3 (4)C8—C7—H7117.0
C4—C3—C2120.3 (4)C2—C7—H7117.0
C4—C3—H3119.9C7—C8—C9120.0 (4)
C2—C3—H3119.9C7—C8—H8120.0
C5—C4—C3122.2 (4)C9—C8—H8120.0
C5—C4—Br1118.9 (4)O2—C9—C8124.5 (4)
C3—C4—Br1118.9 (3)O2—C9—H9117.8
C4—C5—C6118.9 (5)C8—C9—H9117.8
O1—C1—C2—C3−179.8 (4)Br1—C4—C5—C6−176.7 (4)
C6—C1—C2—C3−0.2 (6)O1—C1—C6—C5179.6 (5)
O1—C1—C2—C70.1 (6)C2—C1—C6—C50.1 (7)
C6—C1—C2—C7179.7 (4)C4—C5—C6—C1−0.7 (8)
C1—C2—C3—C41.0 (6)C3—C2—C7—C8−5.0 (7)
C7—C2—C3—C4−178.9 (4)C1—C2—C7—C8175.1 (4)
C2—C3—C4—C5−1.7 (7)C2—C7—C8—C9179.7 (4)
C2—C3—C4—Br1176.5 (3)C7—C8—C9—O2177.5 (5)
C3—C4—C5—C61.5 (8)
D—H···AD—HH···AD···AD—H···A
O1—H1···O2i0.841.892.693 (5)160
C5—H5···O2ii0.952.353.267 (6)162
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1H1O2i 0.841.892.693(5)160
C5H5O2ii 0.952.353.267(6)162

Symmetry codes: (i) ; (ii) .

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