Literature DB >> 25484835

Crystal structure of 5-(4,5-di-hydro-1H-imidazol-2-yl)-3-methyl-1-phenyl-1H-pyrazolo-[3,4-b]pyrazin-6-amine.

Joel T Mague1, Shaaban K Mohamed2, Mehmet Akkurt3, Talaat I El-Emary4, Mustafa R Albayati5.   

Abstract

In the title compound, C15H15N7, the phenyl ring is inclined by 19.86 (5)° to the mean plane of the pyrazolo-[3,4-b]pyrazine core. In the crystal, N-H⋯N and C-H⋯N hydrogen bonds form [010] chains, which stack via π-π inter-actions [centroid-centroid distance between the pyrazole rings = 3.4322 (7) Å].

Entities:  

Keywords:  crystal structure; hydrogen bonding; pyrazolo­[3,4-b]pyrazine; scaffold compounds; π–π inter­actions

Year:  2014        PMID: 25484835      PMCID: PMC4257272          DOI: 10.1107/S160053681402354X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of similar pyrazolo­[3,4-b]pyrazines, see: El-Emary & El-Kashef (2013 ▶). For different biological and industrial applications of pyrazolo­pyrazine scaffold compounds, see: El-Emary et al. (1998 ▶); El-Kashef et al. (2000 ▶); El-Emary (2006 ▶); Rangnekar (1990 ▶).

Experimental

Crystal data

C15H15N7 M = 293.34 Monoclinic, a = 7.9412 (2) Å b = 15.7078 (3) Å c = 22.3276 (4) Å β = 98.573 (1)° V = 2754.00 (10) Å3 Z = 8 Cu Kα radiation μ = 0.75 mm−1 T = 150 K 0.15 × 0.10 × 0.05 mm

Data collection

Bruker D8 VENTURE PHOTON 100 CMOS diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2014 ▶) T min = 0.93, T max = 0.97 21033 measured reflections 2685 independent reflections 2335 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.094 S = 1.04 2685 reflections 201 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.17 e Å−3

Data collection: APEX2 (Bruker, 2014 ▶); cell refinement: SAINT (Bruker, 2014 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2012 ▶); software used to prepare material for publication: SHELXTL2014 (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681402354X/hg5415sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681402354X/hg5415Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S160053681402354X/hg5415Isup3.cml Click here for additional data file. . DOI: 10.1107/S160053681402354X/hg5415fig1.tif The title mol­ecule with numbering scheme and 50% probability ellipsoids. The intra­molecular hydrogen bond is shown as a blue dotted line. Click here for additional data file. . DOI: 10.1107/S160053681402354X/hg5415fig2.tif Plan view of the chain showing N—H⋯N and C—H⋯N hydrogen bonds as blue and black dotted lines, respectively. Click here for additional data file. . DOI: 10.1107/S160053681402354X/hg5415fig3.tif Elevation view of two chains showing the π-π inter­actions as green dotted lines. Click here for additional data file. a . DOI: 10.1107/S160053681402354X/hg5415fig4.tif Packing viewed down the a axis. CCDC reference: 1031105 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H15N7F(000) = 1232
Mr = 293.34Dx = 1.415 Mg m3
Monoclinic, C2/cCu Kα radiation, λ = 1.54178 Å
a = 7.9412 (2) ÅCell parameters from 9946 reflections
b = 15.7078 (3) Åθ = 4.0–71.7°
c = 22.3276 (4) ŵ = 0.75 mm1
β = 98.573 (1)°T = 150 K
V = 2754.00 (10) Å3Block, colourless
Z = 80.15 × 0.10 × 0.05 mm
Bruker D8 VENTURE PHOTON 100 CMOS diffractometer2685 independent reflections
Radiation source: INCOATEC IµS micro–focus source2335 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.031
Detector resolution: 10.4167 pixels mm-1θmax = 72.0°, θmin = 4.0°
ω scansh = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 2014)k = −19→18
Tmin = 0.93, Tmax = 0.97l = −25→27
21033 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.094w = 1/[σ2(Fo2) + (0.047P)2 + 1.7272P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
2685 reflectionsΔρmax = 0.23 e Å3
201 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL2014 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.00012 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 - 0.98 Å) while those attached to nitrogen were placed in locations derived from a difference map and their parameters adjusted to give N—H = 0.91 Å. All were included as riding contributions with isotropic displacement parameters 1.2 - 1.5 times those of the attached atoms.
xyzUiso*/Ueq
N10.21440 (13)0.23938 (6)0.22995 (4)0.0252 (2)
N20.24278 (14)0.15429 (6)0.24683 (5)0.0284 (3)
N30.49830 (13)0.27132 (6)0.36366 (5)0.0255 (2)
N40.31514 (13)0.37679 (6)0.27055 (4)0.0258 (2)
N50.43603 (15)0.49390 (7)0.32160 (5)0.0350 (3)
H5A0.50510.51490.35450.042*
H5B0.38060.52950.29310.042*
N60.62895 (15)0.47203 (7)0.43134 (5)0.0345 (3)
N70.69317 (15)0.33776 (7)0.46313 (5)0.0339 (3)
H7A0.72650.28590.45110.041*
C10.10360 (15)0.25899 (8)0.17597 (5)0.0255 (3)
C20.03232 (16)0.33968 (8)0.16704 (6)0.0292 (3)
H20.06000.38290.19670.035*
C3−0.07919 (17)0.35656 (9)0.11468 (6)0.0325 (3)
H3−0.12690.41190.10830.039*
C4−0.12216 (18)0.29404 (9)0.07151 (6)0.0366 (3)
H4−0.20160.30570.03630.044*
C5−0.04798 (19)0.21408 (9)0.08019 (6)0.0382 (3)
H5−0.07570.17110.05040.046*
C60.06600 (18)0.19648 (8)0.13184 (6)0.0322 (3)
H60.11830.14210.13710.039*
C70.30685 (15)0.29182 (8)0.27108 (5)0.0241 (3)
C80.39641 (15)0.23910 (8)0.31557 (5)0.0251 (3)
C90.35066 (16)0.15415 (8)0.29763 (6)0.0278 (3)
C100.4086 (2)0.07325 (9)0.32887 (7)0.0377 (3)
H10A0.34650.02530.30790.057*
H10B0.38660.07530.37090.057*
H10C0.53090.06590.32840.057*
C110.41803 (16)0.40912 (8)0.31815 (5)0.0260 (3)
C120.50810 (15)0.35545 (8)0.36559 (5)0.0253 (3)
C130.61270 (16)0.39176 (8)0.41964 (5)0.0263 (3)
C140.80754 (19)0.38977 (9)0.50567 (6)0.0366 (3)
H14A0.92680.38540.49800.044*
H14B0.80180.37360.54820.044*
C150.73523 (19)0.47864 (9)0.49128 (6)0.0380 (3)
H15A0.66580.49700.52230.046*
H15B0.82830.52030.49010.046*
U11U22U33U12U13U23
N10.0278 (5)0.0214 (5)0.0242 (5)−0.0011 (4)−0.0036 (4)−0.0001 (4)
N20.0326 (6)0.0213 (5)0.0288 (6)−0.0016 (4)−0.0037 (4)0.0005 (4)
N30.0263 (5)0.0237 (5)0.0250 (5)−0.0011 (4)−0.0008 (4)−0.0008 (4)
N40.0269 (6)0.0230 (5)0.0256 (5)−0.0006 (4)−0.0019 (4)−0.0005 (4)
N50.0429 (7)0.0222 (5)0.0345 (6)0.0006 (5)−0.0123 (5)−0.0005 (4)
N60.0385 (6)0.0279 (6)0.0329 (6)−0.0012 (5)−0.0082 (5)−0.0059 (5)
N70.0434 (7)0.0270 (6)0.0269 (6)−0.0027 (5)−0.0087 (5)−0.0004 (4)
C10.0244 (6)0.0276 (6)0.0233 (6)−0.0040 (5)−0.0007 (5)0.0017 (5)
C20.0300 (7)0.0289 (7)0.0269 (6)0.0004 (5)−0.0014 (5)−0.0016 (5)
C30.0319 (7)0.0319 (7)0.0315 (7)0.0023 (5)−0.0024 (6)0.0031 (5)
C40.0370 (7)0.0396 (8)0.0289 (7)−0.0038 (6)−0.0095 (6)0.0032 (6)
C50.0465 (8)0.0337 (7)0.0301 (7)−0.0065 (6)−0.0088 (6)−0.0033 (6)
C60.0387 (7)0.0251 (6)0.0300 (7)−0.0030 (5)−0.0035 (6)−0.0002 (5)
C70.0232 (6)0.0249 (6)0.0233 (6)−0.0013 (5)0.0009 (5)−0.0011 (5)
C80.0260 (6)0.0233 (6)0.0245 (6)0.0000 (5)−0.0010 (5)0.0002 (5)
C90.0300 (7)0.0246 (6)0.0270 (6)−0.0013 (5)−0.0018 (5)−0.0002 (5)
C100.0463 (8)0.0254 (7)0.0364 (7)−0.0021 (6)−0.0108 (6)0.0029 (5)
C110.0261 (6)0.0244 (6)0.0262 (6)0.0006 (5)−0.0004 (5)−0.0016 (5)
C120.0251 (6)0.0243 (6)0.0253 (6)−0.0011 (5)0.0005 (5)−0.0016 (5)
C130.0259 (6)0.0268 (6)0.0252 (6)−0.0011 (5)0.0007 (5)−0.0008 (5)
C140.0408 (8)0.0371 (7)0.0280 (7)−0.0054 (6)−0.0075 (6)−0.0028 (6)
C150.0398 (8)0.0359 (7)0.0339 (7)−0.0033 (6)−0.0089 (6)−0.0089 (6)
N1—C71.3638 (15)C3—C41.3826 (19)
N1—N21.3978 (14)C3—H30.9500
N1—C11.4161 (16)C4—C51.389 (2)
N2—C91.3158 (17)C4—H40.9500
N3—C121.3241 (16)C5—C61.3836 (19)
N3—C81.3435 (16)C5—H50.9500
N4—C71.3365 (16)C6—H60.9500
N4—C111.3401 (16)C7—C81.4028 (17)
N5—C111.3404 (16)C8—C91.4246 (17)
N5—H5A0.9100C9—C101.4891 (18)
N5—H5B0.9099C10—H10A0.9800
N6—C131.2902 (17)C10—H10B0.9800
N6—C151.4755 (17)C10—H10C0.9800
N7—C131.3732 (16)C11—C121.4554 (17)
N7—C141.4620 (17)C12—C131.4741 (16)
N7—H7A0.9099C14—C151.525 (2)
C1—C21.3904 (18)C14—H14A0.9900
C1—C61.3916 (18)C14—H14B0.9900
C2—C31.3829 (18)C15—H15A0.9900
C2—H20.9500C15—H15B0.9900
C7—N1—N2110.30 (10)N3—C8—C7121.67 (11)
C7—N1—C1130.20 (10)N3—C8—C9132.50 (11)
N2—N1—C1119.48 (10)C7—C8—C9105.83 (11)
C9—N2—N1106.98 (10)N2—C9—C8110.29 (11)
C12—N3—C8115.30 (10)N2—C9—C10121.41 (11)
C7—N4—C11113.36 (10)C8—C9—C10128.29 (11)
C11—N5—H5A116.9C9—C10—H10A109.5
C11—N5—H5B122.3C9—C10—H10B109.5
H5A—N5—H5B120.8H10A—C10—H10B109.5
C13—N6—C15106.19 (11)C9—C10—H10C109.5
C13—N7—C14107.03 (11)H10A—C10—H10C109.5
C13—N7—H7A118.0H10B—C10—H10C109.5
C14—N7—H7A120.9N4—C11—N5117.98 (11)
C2—C1—C6120.12 (12)N4—C11—C12122.21 (11)
C2—C1—N1120.56 (11)N5—C11—C12119.81 (11)
C6—C1—N1119.31 (11)N3—C12—C11122.30 (11)
C3—C2—C1119.46 (12)N3—C12—C13115.85 (11)
C3—C2—H2120.3C11—C12—C13121.83 (11)
C1—C2—H2120.3N6—C13—N7116.00 (11)
C4—C3—C2120.89 (13)N6—C13—C12124.83 (11)
C4—C3—H3119.6N7—C13—C12119.08 (11)
C2—C3—H3119.6N7—C14—C15101.34 (10)
C3—C4—C5119.33 (12)N7—C14—H14A111.5
C3—C4—H4120.3C15—C14—H14A111.5
C5—C4—H4120.3N7—C14—H14B111.5
C6—C5—C4120.54 (13)C15—C14—H14B111.5
C6—C5—H5119.7H14A—C14—H14B109.3
C4—C5—H5119.7N6—C15—C14105.85 (10)
C5—C6—C1119.60 (13)N6—C15—H15A110.6
C5—C6—H6120.2C14—C15—H15A110.6
C1—C6—H6120.2N6—C15—H15B110.6
N4—C7—N1128.29 (11)C14—C15—H15B110.6
N4—C7—C8125.12 (11)H15A—C15—H15B108.7
N1—C7—C8106.59 (10)
C7—N1—N2—C90.15 (14)N1—N2—C9—C8−0.06 (15)
C1—N1—N2—C9179.34 (11)N1—N2—C9—C10179.61 (12)
C7—N1—C1—C2−20.6 (2)N3—C8—C9—N2178.77 (13)
N2—N1—C1—C2160.36 (11)C7—C8—C9—N2−0.05 (15)
C7—N1—C1—C6159.58 (12)N3—C8—C9—C10−0.9 (2)
N2—N1—C1—C6−19.42 (17)C7—C8—C9—C10−179.69 (14)
C6—C1—C2—C31.55 (19)C7—N4—C11—N5179.53 (11)
N1—C1—C2—C3−178.23 (11)C7—N4—C11—C12−0.94 (17)
C1—C2—C3—C40.8 (2)C8—N3—C12—C11−1.44 (17)
C2—C3—C4—C5−2.0 (2)C8—N3—C12—C13177.08 (10)
C3—C4—C5—C60.9 (2)N4—C11—C12—N32.23 (19)
C4—C5—C6—C11.4 (2)N5—C11—C12—N3−178.24 (12)
C2—C1—C6—C5−2.6 (2)N4—C11—C12—C13−176.20 (11)
N1—C1—C6—C5177.17 (12)N5—C11—C12—C133.32 (18)
C11—N4—C7—N1179.70 (12)C15—N6—C13—N70.00 (16)
C11—N4—C7—C8−0.87 (18)C15—N6—C13—C12176.46 (12)
N2—N1—C7—N4179.34 (12)C14—N7—C13—N6−12.26 (16)
C1—N1—C7—N40.3 (2)C14—N7—C13—C12171.07 (11)
N2—N1—C7—C8−0.18 (13)N3—C12—C13—N6−175.55 (12)
C1—N1—C7—C8−179.25 (12)C11—C12—C13—N63.0 (2)
C12—N3—C8—C7−0.33 (17)N3—C12—C13—N70.80 (17)
C12—N3—C8—C9−178.99 (13)C11—C12—C13—N7179.33 (11)
N4—C7—C8—N31.63 (19)C13—N7—C14—C1517.78 (15)
N1—C7—C8—N3−178.84 (11)C13—N6—C15—C1411.67 (16)
N4—C7—C8—C9−179.40 (12)N7—C14—C15—N6−17.76 (15)
N1—C7—C8—C90.14 (13)
D—H···AD—HH···AD···AD—H···A
C6—H6···N5i0.952.563.3483 (17)140
N5—H5B···N2ii0.912.313.1702 (15)158
N5—H5A···N60.911.972.7111 (15)138
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C6H6N5i 0.952.563.3483(17)140
N5H5BN2ii 0.912.313.1702(15)158
N5H5AN60.911.972.7111(15)138

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  First synthesis and biological evaluation of indeno[2,1-e]pyrazolo[3,4-b]pyrazin-5-one and related derivatives.

Authors:  Talaat El-Emary; Hussein El-Kashef
Journal:  Eur J Med Chem       Date:  2013-01-26       Impact factor: 6.514

3.  New pyrazolo[3,4-b]pyrazines: synthesis and biological activity.

Authors:  H S el-Kashef; T I el-Emary; M Gasquet; P Timon-David; J Maldonado; P Vanelle
Journal:  Pharmazie       Date:  2000-08       Impact factor: 1.267

  3 in total

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