Literature DB >> 25484828

Crystal structure of 3-meth-oxy-carbonyl-2-(4-meth-oxy-phen-yl)-8-oxo-1-aza-spiro[4.5]deca-1,6,9-trien-1-ium-1-olate.

Lucimara Julio Martins1, Deborah de Alencar Simoni2, Ricardo Aparicio3, Fernando Coelho1.   

Abstract

The title compound, C18H17NO5, was prepared by a synthetic strategy based on the Heck reaction from Morita-Baylis-Hillman adducts. The five-membered ring adopts a slightly twisted conformation on the Ca-Cm (a = aromatic and m = methyl-ene) bond. The dihedral angle between the five-membered ring and the spiro aromatic ring is 89.35 (7)°; that between the five-membered ring and the 4-meth-oxy-benzene ring is 4.65 (7)°. Two short intra-molecular C-H⋯O contacts occur. In the crystal, mol-ecules are linked by C-H⋯O hydrogen bonds to generate a three-dimensional network.

Entities:  

Keywords:  Morita–Baylis–Hillman aducts; single-crystal X-ray study; spiro­hexa­dienone structure

Year:  2014        PMID: 25484828      PMCID: PMC4257292          DOI: 10.1107/S1600536814023277

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For compounds that contain a spiro­hexa­dienone moiety in their structures, see: Wright & König (1993 ▶); König et al. (1990 ▶); Beil et al. (1998 ▶) and for their biological activities, see: Glushkov et al. (2010 ▶); Pereira et al. (2007 ▶). For strategies for the synthesis of spiro-hexa­dienones from Morita–Baylis–Hillman adducts, see: Coelho et al. (2002 ▶); Ferreira et al. (2009 ▶); Pirovani et al. (2009 ▶); Martins et al. (2014 ▶). For the biological activity of compounds containing a nitrone group, see: Fangour et al. (2009 ▶); Floyd et al. (2008 ▶); Halliwell & Gutteridge (1999 ▶); Fevig et al. (1996 ▶). For a discussion about non-classical hydrogen bonds, see: Desiraju (2005 ▶).

Experimental

Crystal data

C18H17NO5 M = 327.32 Triclinic, a = 6.0916 (11) Å b = 8.7713 (16) Å c = 15.167 (3) Å α = 80.255 (6)° β = 81.703 (6)° γ = 80.122 (6)° V = 781.3 (2) Å3 Z = 2 Cu Kα radiation μ = 0.85 mm−1 T = 100 K 0.47 × 0.20 × 0.17 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2010 ▶) T min = 0.813, T max = 1.000 14656 measured reflections 2771 independent reflections 2727 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.105 S = 1.11 2771 reflections 220 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.35 e Å−3

Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2008 ▶); molecular graphics: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814023277/hb7301sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814023277/hb7301Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814023277/hb7301Isup3.cdx Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814023277/hb7301Isup4.cml Click here for additional data file. . DOI: 10.1107/S1600536814023277/hb7301fig1.tif The mol­ecular structure of the title compound with 50% probability displacement ellipsoids. Click here for additional data file. . DOI: 10.1107/S1600536814023277/hb7301fig2.tif Crystal packing of the title compound, showing hydrogen bonding inter­actions. CCDC reference: 1030399 Additional supporting information: crystallographic information; 3D view; checkCIF report
C18H17NO5Z = 2
Mr = 327.32F(000) = 344
Triclinic, P1Dx = 1.391 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54178 Å
a = 6.0916 (11) ÅCell parameters from 109 reflections
b = 8.7713 (16) Åθ = 9.0–38.4°
c = 15.167 (3) ŵ = 0.85 mm1
α = 80.255 (6)°T = 100 K
β = 81.703 (6)°Prismatic, colourless
γ = 80.122 (6)°0.47 × 0.20 × 0.17 mm
V = 781.3 (2) Å3
Bruker APEXII CCD diffractometer2771 independent reflections
Radiation source: fine-focus sealed tube2727 reflections with I > 2σ(I)
Detector resolution: 8.3333 pixels mm-1Rint = 0.033
φ and ω scansθmax = 67.7°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2010)h = −5→7
Tmin = 0.813, Tmax = 1.000k = −10→10
14656 measured reflectionsl = −18→17
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.042w = 1/[σ2(Fo2) + (0.0542P)2 + 0.3281P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.105(Δ/σ)max < 0.001
S = 1.11Δρmax = 0.28 e Å3
2771 reflectionsΔρmin = −0.35 e Å3
220 parametersExtinction correction: SHELXL2014 (Sheldrick, 2014), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.043 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O20.20642 (16)0.89397 (12)0.62486 (6)0.0247 (3)
O50.19082 (18)0.28804 (12)0.01392 (7)0.0309 (3)
O10.19910 (14)0.44109 (11)0.32280 (6)0.0199 (2)
O40.91693 (15)0.79511 (11)0.19091 (7)0.0228 (3)
O30.54105 (16)0.85337 (11)0.19863 (7)0.0281 (3)
N10.38917 (17)0.48769 (12)0.29230 (7)0.0166 (3)
C8−0.0287 (2)0.92550 (17)0.65513 (10)0.0252 (3)
H1A−0.11060.97200.60360.038*
H1B−0.05350.99850.69910.038*
H1C−0.08270.82760.68330.038*
C50.2673 (2)0.80731 (16)0.55566 (9)0.0202 (3)
C40.1260 (2)0.72330 (16)0.52570 (9)0.0200 (3)
H3−0.02220.72030.55510.024*
C30.2017 (2)0.64391 (15)0.45269 (9)0.0189 (3)
H40.10480.58550.43330.023*
C20.4179 (2)0.64816 (15)0.40712 (9)0.0177 (3)
C10.4981 (2)0.57613 (15)0.32644 (9)0.0173 (3)
C130.4972 (2)0.44582 (15)0.20162 (9)0.0180 (3)
C140.3688 (2)0.55382 (15)0.13203 (9)0.0186 (3)
H80.35690.66350.13120.022*
C150.2712 (2)0.50353 (16)0.07177 (9)0.0202 (3)
H90.19340.57770.02930.024*
C160.2811 (2)0.33526 (16)0.06944 (9)0.0216 (3)
C70.5596 (2)0.73034 (16)0.44026 (9)0.0207 (3)
H110.70830.73320.41140.025*
C60.4867 (2)0.80683 (16)0.51396 (9)0.0223 (3)
H120.58630.85930.53630.027*
C180.4924 (2)0.27616 (15)0.20004 (9)0.0197 (3)
H130.55800.20100.24540.024*
C170.4002 (2)0.22581 (16)0.13799 (9)0.0213 (3)
H140.41170.11640.13790.026*
C120.7367 (2)0.48121 (15)0.20051 (9)0.0196 (3)
H15A0.79560.52740.13940.024*
H15B0.83890.38460.21990.024*
C90.7139 (2)0.59949 (15)0.26787 (9)0.0186 (3)
H160.84220.57320.30490.022*
C100.7081 (2)0.76464 (16)0.21684 (9)0.0195 (3)
C110.9377 (3)0.93704 (17)0.12808 (10)0.0270 (3)
H18A0.87040.93290.07380.040*
H18B1.09680.94700.11180.040*
H18C0.86011.02740.15610.040*
U11U22U33U12U13U23
O20.0232 (5)0.0323 (6)0.0211 (5)−0.0051 (4)−0.0046 (4)−0.0084 (4)
O50.0324 (6)0.0323 (6)0.0319 (6)−0.0051 (5)−0.0150 (5)−0.0066 (4)
O10.0130 (5)0.0267 (5)0.0208 (5)−0.0079 (4)−0.0007 (4)−0.0017 (4)
O40.0166 (5)0.0233 (5)0.0272 (5)−0.0063 (4)0.0016 (4)−0.0003 (4)
O30.0188 (5)0.0246 (5)0.0372 (6)−0.0016 (4)−0.0037 (4)0.0044 (4)
N10.0128 (5)0.0199 (5)0.0161 (5)−0.0027 (4)−0.0024 (4)0.0005 (4)
C80.0252 (7)0.0298 (7)0.0210 (7)−0.0038 (6)−0.0018 (6)−0.0061 (6)
C50.0233 (7)0.0216 (7)0.0158 (6)−0.0023 (5)−0.0067 (5)−0.0005 (5)
C40.0179 (6)0.0231 (7)0.0183 (6)−0.0047 (5)−0.0025 (5)0.0008 (5)
C30.0180 (6)0.0209 (6)0.0184 (6)−0.0057 (5)−0.0048 (5)0.0004 (5)
C20.0163 (6)0.0187 (6)0.0174 (6)−0.0028 (5)−0.0051 (5)0.0022 (5)
C10.0143 (6)0.0185 (6)0.0182 (6)−0.0023 (5)−0.0051 (5)0.0019 (5)
C130.0139 (6)0.0229 (7)0.0166 (6)−0.0016 (5)−0.0014 (5)−0.0023 (5)
C140.0140 (6)0.0202 (6)0.0190 (6)−0.0005 (5)0.0006 (5)−0.0004 (5)
C150.0148 (6)0.0250 (7)0.0184 (6)−0.0002 (5)−0.0023 (5)0.0011 (5)
C160.0156 (6)0.0280 (7)0.0214 (7)−0.0036 (5)−0.0017 (5)−0.0039 (6)
C70.0153 (6)0.0238 (7)0.0229 (7)−0.0043 (5)−0.0045 (5)−0.0001 (5)
C60.0199 (7)0.0245 (7)0.0246 (7)−0.0054 (5)−0.0094 (5)−0.0019 (5)
C180.0159 (6)0.0216 (7)0.0195 (6)0.0000 (5)−0.0017 (5)0.0000 (5)
C170.0180 (7)0.0208 (7)0.0243 (7)−0.0027 (5)−0.0017 (5)−0.0021 (5)
C120.0136 (6)0.0226 (7)0.0219 (7)−0.0013 (5)−0.0027 (5)−0.0017 (5)
C90.0130 (6)0.0218 (7)0.0204 (6)−0.0021 (5)−0.0037 (5)−0.0006 (5)
C100.0159 (6)0.0231 (7)0.0197 (7)−0.0041 (5)−0.0013 (5)−0.0033 (5)
C110.0275 (8)0.0252 (7)0.0277 (7)−0.0109 (6)0.0023 (6)0.0002 (6)
O2—C51.3705 (17)C13—C141.5066 (18)
O2—C81.4339 (17)C13—C121.5395 (17)
O5—C161.2301 (17)C14—C151.3289 (19)
O1—N11.2905 (14)C14—H80.9500
O4—C101.3345 (16)C15—C161.473 (2)
O4—C111.4462 (17)C15—H90.9500
O3—C101.2059 (17)C16—C171.4732 (19)
N1—C11.3121 (17)C7—C61.380 (2)
N1—C131.5121 (16)C7—H110.9500
C8—H1A0.9800C6—H120.9500
C8—H1B0.9800C18—C171.332 (2)
C8—H1C0.9800C18—H130.9500
C5—C41.3908 (19)C17—H140.9500
C5—C61.393 (2)C12—C91.5519 (18)
C4—C31.3884 (19)C12—H15A0.9900
C4—H30.9500C12—H15B0.9900
C3—C21.3996 (19)C9—C101.5197 (18)
C3—H40.9500C9—H161.0000
C2—C71.4067 (18)C11—H18A0.9800
C2—C11.4554 (19)C11—H18B0.9800
C1—C91.5014 (18)C11—H18C0.9800
C13—C181.4977 (19)
C5—O2—C8116.78 (10)C16—C15—H9119.3
C10—O4—C11115.74 (11)O5—C16—C15121.67 (13)
O1—N1—C1128.90 (11)O5—C16—C17121.42 (13)
O1—N1—C13116.85 (10)C15—C16—C17116.89 (12)
C1—N1—C13114.09 (10)C6—C7—C2121.25 (12)
O2—C8—H1A109.5C6—C7—H11119.4
O2—C8—H1B109.5C2—C7—H11119.4
H1A—C8—H1B109.5C7—C6—C5120.13 (12)
O2—C8—H1C109.5C7—C6—H12119.9
H1A—C8—H1C109.5C5—C6—H12119.9
H1B—C8—H1C109.5C17—C18—C13123.01 (12)
O2—C5—C4124.47 (12)C17—C18—H13118.5
O2—C5—C6115.89 (12)C13—C18—H13118.5
C4—C5—C6119.64 (12)C18—C17—C16121.73 (13)
C3—C4—C5119.90 (12)C18—C17—H14119.1
C3—C4—H3120.1C16—C17—H14119.1
C5—C4—H3120.1C13—C12—C9105.07 (10)
C4—C3—C2121.34 (12)C13—C12—H15A110.7
C4—C3—H4119.3C9—C12—H15A110.7
C2—C3—H4119.3C13—C12—H15B110.7
C3—C2—C7117.62 (12)C9—C12—H15B110.7
C3—C2—C1123.04 (12)H15A—C12—H15B108.8
C7—C2—C1119.31 (12)C1—C9—C10112.58 (11)
N1—C1—C2125.30 (12)C1—C9—C12103.83 (10)
N1—C1—C9110.32 (11)C10—C9—C12109.86 (11)
C2—C1—C9124.32 (11)C1—C9—H16110.1
C18—C13—C14113.42 (11)C10—C9—H16110.1
C18—C13—N1109.22 (10)C12—C9—H16110.1
C14—C13—N1106.44 (10)O3—C10—O4124.52 (12)
C18—C13—C12112.45 (11)O3—C10—C9125.53 (12)
C14—C13—C12113.17 (11)O4—C10—C9109.87 (11)
N1—C13—C12101.15 (10)O4—C11—H18A109.5
C15—C14—C13123.35 (12)O4—C11—H18B109.5
C15—C14—H8118.3H18A—C11—H18B109.5
C13—C14—H8118.3O4—C11—H18C109.5
C14—C15—C16121.39 (12)H18A—C11—H18C109.5
C14—C15—H9119.3H18B—C11—H18C109.5
D—H···AD—HH···AD···AD—H···A
C8—H1C···O1i0.982.593.4941 (18)153
C4—H3···O1i0.952.383.1345 (16)136
C3—H4···O10.952.222.8725 (17)125
C14—H8···O30.952.573.3431 (18)138
C15—H9···O5ii0.952.563.3821 (17)146
C18—H13···O2iii0.952.543.4309 (17)155
C17—H14···O3iv0.952.383.2408 (18)151
C12—H15A···O5v0.992.603.5402 (18)159
C9—H16···O1vi1.002.313.2045 (16)148
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C8H1CO1i 0.982.593.4941(18)153
C4H3O1i 0.952.383.1345(16)136
C3H4O10.952.222.8725(17)125
C14H8O30.952.573.3431(18)138
C15H9O5ii 0.952.563.3821(17)146
C18H13O2iii 0.952.543.4309(17)155
C17H14O3iv 0.952.383.2408(18)151
C12H15AO5v 0.992.603.5402(18)159
C9H16O1vi 1.002.313.2045(16)148

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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