Literature DB >> 25484802

Crystal structure of (2E)-1-(4-hy-droxy-3-meth-oxy-phen-yl)-3-(4-hy-droxy-phen-yl)prop-2-en-1-one.

S Sathya1, D Reuben Jonathan2, K Prathebha1, J Jovita1, G Usha1.   

Abstract

In the title moleclue, C16H14O4, the dihedral angle between the benzene rings is 16.1 (3)°. The meth-oxy group is essentially coplanar with the benzene ring to which it is attached, with a C-O-C C torsion angle of 5.5 (9)°. In the crystal, mol-ecules are linked by O-H⋯O and bifurcated O-H⋯(O,O) hydrogen bonds, forming a three-dimensional network. The structure was refined as a two-component inversion twin.

Entities:  

Keywords:  biological activity; chalcones; crystal structure; hydrogen bonding; prop-2-en-1-one

Year:  2014        PMID: 25484802      PMCID: PMC4257319          DOI: 10.1107/S1600536814021953

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of chalcones, see: Prasad et al. (2008 ▶); Won et al. (2005 ▶); Yu et al. (1982 ▶); Ram et al. (2000 ▶); Khatib et al. (2005 ▶); Papo & Shai (2003 ▶). For related structures, see: Jasinski et al. (2011 ▶); Sathya et al. (2014 ▶). For the synthesis, see: Sidharthan et al. (2012 ▶); Chitra et al. (2013 ▶); Jasmine Francis et al. (2014 ▶).

Experimental

Crystal data

C16H14O4 M = 270.27 Orthorhombic, a = 7.686 (16) Å b = 28.346 (7) Å c = 6.297 (12) Å V = 1371.9 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.35 × 0.30 × 0.25 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.968, T max = 0.977 6436 measured reflections 2996 independent reflections 1928 reflections with I > 2σ(I) R int = 0.055 Standard reflections: ?

Refinement

R[F 2 > 2σ(F 2)] = 0.077 wR(F 2) = 0.244 S = 1.07 2996 reflections 186 parameters 1 restraint H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.30 e Å−3 Absolute structure: refined as an inversion twin (1113 Friedel pairs) Absolute structure parameter: −2 (4)

Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL2013 (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814021953/lh5720sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814021953/lh5720Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814021953/lh5720Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814021953/lh5720fig1.tif The mol­ecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level. Click here for additional data file. . DOI: 10.1107/S1600536814021953/lh5720fig2.tif Part of the crystal structure with dashed lines indicating hydrogen bonds. CCDC reference: 1011152 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H14O4Dx = 1.309 Mg m3
Mr = 270.27Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, Pna21Cell parameters from 2996 reflections
a = 7.686 (16) Åθ = 1.4–28.6°
b = 28.346 (7) ŵ = 0.09 mm1
c = 6.297 (12) ÅT = 293 K
V = 1371.9 (5) Å3Block, yellow
Z = 40.35 × 0.30 × 0.25 mm
F(000) = 568
Bruker Kappa APEXII diffractometer1928 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.055
ω and φ scansθmax = 28.6°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −10→7
Tmin = 0.968, Tmax = 0.977k = −38→19
6436 measured reflectionsl = −8→8
2996 independent reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.077w = 1/[σ2(Fo2) + (0.1225P)2 + 0.7988P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.244(Δ/σ)max = 0.001
S = 1.07Δρmax = 0.33 e Å3
2996 reflectionsΔρmin = −0.30 e Å3
186 parametersAbsolute structure: Refined as an inversion twin.
1 restraintAbsolute structure parameter: −2 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refined as a two-component inversion twin (1113 Friedel pairs).
xyzUiso*/Ueq
O1−0.3786 (6)0.30979 (16)−0.5710 (8)0.0619 (14)
O2−0.1472 (7)0.59683 (14)−0.4180 (10)0.0668 (14)
H2A−0.19360.6120−0.51320.100*
O3−0.0576 (6)0.16926 (13)0.0881 (8)0.0509 (11)
H3A−0.03690.17640.21180.076*
O4−0.2259 (7)0.15243 (14)−0.2582 (7)0.0554 (12)
C1−0.1999 (8)0.5514 (2)−0.4288 (11)0.0489 (14)
C2−0.1264 (9)0.5197 (2)−0.2908 (11)0.0532 (16)
H2−0.04740.5303−0.18970.064*
C3−0.1667 (9)0.4730 (2)−0.2989 (11)0.0543 (17)
H3−0.11540.4522−0.20310.065*
C4−0.2855 (8)0.4557 (2)−0.4510 (11)0.0477 (15)
C5−0.3587 (9)0.4886 (2)−0.5881 (12)0.0547 (17)
H5−0.43680.4782−0.69080.066*
C6−0.3199 (9)0.5359 (2)−0.5777 (11)0.0552 (17)
H6−0.37340.5572−0.66920.066*
C7−0.3207 (8)0.4055 (2)−0.4780 (12)0.0526 (17)
H7−0.38850.3972−0.59460.063*
C8−0.2672 (8)0.3700 (2)−0.3556 (11)0.0497 (16)
H8−0.20550.3772−0.23280.060*
C9−0.3000 (8)0.3208 (2)−0.4035 (11)0.0478 (14)
C10−0.2331 (7)0.2830 (2)−0.2685 (11)0.0400 (13)
C11−0.1520 (8)0.2909 (2)−0.0730 (10)0.0458 (15)
H11−0.13730.3216−0.02430.055*
C12−0.0934 (8)0.2536 (2)0.0485 (11)0.0470 (15)
H12−0.03760.25950.17680.056*
C13−0.1165 (8)0.2079 (2)−0.0180 (10)0.0430 (14)
C14−0.2036 (8)0.1996 (2)−0.2123 (9)0.0406 (13)
C15−0.2577 (8)0.2362 (2)−0.3315 (9)0.0424 (14)
H15−0.31320.2302−0.45990.051*
C16−0.3006 (10)0.1410 (2)−0.4595 (11)0.0587 (18)
H16A−0.30470.1073−0.47570.088*
H16B−0.23100.1543−0.57080.088*
H16C−0.41650.1535−0.46730.088*
U11U22U33U12U13U23
O10.064 (3)0.060 (3)0.062 (3)−0.001 (2)−0.022 (3)0.010 (2)
O20.082 (4)0.045 (3)0.072 (3)0.005 (2)−0.019 (3)−0.001 (3)
O30.061 (3)0.046 (2)0.045 (2)−0.0050 (19)−0.012 (2)0.007 (2)
O40.077 (3)0.040 (2)0.049 (3)−0.007 (2)−0.010 (2)0.001 (2)
C10.049 (3)0.049 (3)0.049 (3)0.009 (3)−0.001 (3)0.000 (3)
C20.053 (4)0.055 (4)0.051 (4)0.007 (3)−0.013 (3)0.002 (3)
C30.056 (4)0.055 (4)0.051 (4)0.011 (3)−0.014 (4)0.006 (3)
C40.038 (3)0.049 (3)0.057 (4)0.004 (2)−0.002 (3)0.009 (3)
C50.051 (4)0.056 (4)0.057 (4)0.001 (3)−0.019 (3)0.008 (3)
C60.053 (4)0.052 (4)0.060 (4)0.007 (3)−0.009 (4)0.015 (3)
C70.042 (4)0.054 (4)0.061 (4)−0.001 (3)−0.006 (3)0.008 (3)
C80.046 (3)0.049 (4)0.054 (4)−0.002 (3)−0.005 (3)0.007 (3)
C90.041 (3)0.048 (4)0.054 (4)0.001 (2)0.002 (3)0.006 (3)
C100.025 (3)0.049 (3)0.046 (3)−0.003 (2)−0.001 (2)0.001 (3)
C110.042 (3)0.042 (3)0.053 (4)0.001 (2)−0.004 (3)−0.003 (3)
C120.043 (3)0.052 (4)0.046 (4)−0.006 (2)0.002 (3)0.000 (3)
C130.038 (3)0.050 (3)0.041 (3)−0.003 (2)−0.001 (3)0.004 (3)
C140.038 (3)0.043 (3)0.041 (3)−0.005 (2)0.002 (3)0.003 (2)
C150.033 (3)0.053 (4)0.042 (3)−0.002 (2)−0.001 (2)0.002 (2)
C160.064 (4)0.059 (4)0.053 (4)−0.012 (3)−0.008 (4)−0.004 (3)
O1—C91.256 (8)C7—C81.331 (9)
O2—C11.351 (7)C7—H70.9300
O2—H2A0.8200C8—C91.449 (9)
O3—C131.361 (7)C8—H80.9300
O3—H3A0.8200C9—C101.462 (8)
O4—C141.378 (7)C10—C151.396 (8)
O4—C161.429 (8)C10—C111.398 (9)
C1—C21.372 (9)C11—C121.381 (9)
C1—C61.387 (9)C11—H110.9300
C2—C31.360 (9)C12—C131.371 (8)
C2—H20.9300C12—H120.9300
C3—C41.412 (9)C13—C141.414 (8)
C3—H30.9300C14—C151.348 (8)
C4—C51.390 (9)C15—H150.9300
C4—C71.459 (8)C16—H16A0.9600
C5—C61.375 (9)C16—H16B0.9600
C5—H50.9300C16—H16C0.9600
C6—H60.9300
C1—O2—H2A109.5O1—C9—C8119.9 (6)
C13—O3—H3A109.5O1—C9—C10118.4 (5)
C14—O4—C16117.2 (5)C8—C9—C10121.6 (6)
O2—C1—C2118.0 (6)C15—C10—C11117.5 (5)
O2—C1—C6122.4 (6)C15—C10—C9118.9 (6)
C2—C1—C6119.6 (6)C11—C10—C9123.5 (5)
C3—C2—C1121.3 (6)C12—C11—C10120.8 (5)
C3—C2—H2119.3C12—C11—H11119.6
C1—C2—H2119.3C10—C11—H11119.6
C2—C3—C4120.7 (6)C13—C12—C11120.7 (6)
C2—C3—H3119.6C13—C12—H12119.6
C4—C3—H3119.6C11—C12—H12119.6
C5—C4—C3116.7 (6)O3—C13—C12124.5 (6)
C5—C4—C7120.5 (6)O3—C13—C14116.6 (5)
C3—C4—C7122.6 (5)C12—C13—C14118.9 (5)
C6—C5—C4122.5 (6)C15—C14—O4126.3 (6)
C6—C5—H5118.7C15—C14—C13119.9 (5)
C4—C5—H5118.7O4—C14—C13113.8 (5)
C5—C6—C1119.0 (6)C14—C15—C10122.1 (6)
C5—C6—H6120.5C14—C15—H15118.9
C1—C6—H6120.5C10—C15—H15118.9
C8—C7—C4127.7 (7)O4—C16—H16A109.5
C8—C7—H7116.1O4—C16—H16B109.5
C4—C7—H7116.1H16A—C16—H16B109.5
C7—C8—C9123.5 (7)O4—C16—H16C109.5
C7—C8—H8118.2H16A—C16—H16C109.5
C9—C8—H8118.2H16B—C16—H16C109.5
O2—C1—C2—C3−176.8 (6)O1—C9—C10—C11−176.4 (6)
C6—C1—C2—C31.0 (10)C8—C9—C10—C117.9 (9)
C1—C2—C3—C40.3 (10)C15—C10—C11—C122.2 (8)
C2—C3—C4—C5−0.6 (10)C9—C10—C11—C12179.2 (6)
C2—C3—C4—C7174.4 (7)C10—C11—C12—C13−1.3 (9)
C3—C4—C5—C6−0.4 (10)C11—C12—C13—O3177.6 (6)
C7—C4—C5—C6−175.5 (7)C11—C12—C13—C14−0.8 (8)
C4—C5—C6—C11.7 (10)C16—O4—C14—C155.5 (9)
O2—C1—C6—C5175.8 (7)C16—O4—C14—C13−175.3 (5)
C2—C1—C6—C5−2.0 (10)O3—C13—C14—C15−176.6 (5)
C5—C4—C7—C8−176.8 (6)C12—C13—C14—C151.9 (8)
C3—C4—C7—C88.5 (11)O3—C13—C14—O44.1 (7)
C4—C7—C8—C9−175.9 (6)C12—C13—C14—O4−177.3 (5)
C7—C8—C9—O12.0 (10)O4—C14—C15—C10178.2 (5)
C7—C8—C9—C10177.6 (6)C13—C14—C15—C10−1.0 (9)
O1—C9—C10—C150.5 (9)C11—C10—C15—C14−1.1 (8)
C8—C9—C10—C15−175.2 (5)C9—C10—C15—C14−178.2 (6)
D—H···AD—HH···AD···AD—H···A
O2—H2A···O3i0.822.593.060 (6)118
O2—H2A···O4i0.822.022.833 (7)172
O3—H3A···O1ii0.821.872.618 (7)151
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O2H2AO3i 0.822.593.060(6)118
O2H2AO4i 0.822.022.833(7)172
O3H3AO1ii 0.821.872.618(7)151

Symmetry codes: (i) ; (ii) .

  8 in total

1.  Oxygenated chalcones and bischalcones as potential antimalarial agents.

Authors:  V J Ram; A S Saxena; S Srivastava; S Chandra
Journal:  Bioorg Med Chem Lett       Date:  2000-10-02       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Chalcones as potent tyrosinase inhibitors: the importance of a 2,4-substituted resorcinol moiety.

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Journal:  Bioorg Med Chem       Date:  2005-01-17       Impact factor: 3.641

4.  Synthetic chalcones as potential anti-inflammatory and cancer chemopreventive agents.

Authors:  Shen-Jeu Won; Cheng-Tsung Liu; Lo-Ti Tsao; Jing-Ru Weng; Horng-Huey Ko; Jih-Pyang Wang; Chun-Nan Lin
Journal:  Eur J Med Chem       Date:  2005-01       Impact factor: 6.514

Review 5.  Can we predict biological activity of antimicrobial peptides from their interactions with model phospholipid membranes?

Authors:  Niv Papo; Yechiel Shai
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6.  (E)-3-(3,4-Dimeth-oxy-phen-yl)-1-(2-hy-droxy-phen-yl)prop-2-en-1-one.

Authors:  Jerry P Jasinski; Ray J Butcher; V Musthafa Khaleel; B K Sarojini; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-12

7.  (E)-3-(4-Hy-droxy-3-meth-oxy-phen-yl)-1-(4-hy-droxy-phen-yl)prop-2-en-1-one.

Authors:  S Sathya; D Reuben Jonathan; K Prathebha; G Usha; J Jovita
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-26

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

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