Literature DB >> 25484792

Crystal structure of 6-eth-oxy-pyridin-1-ium-2-olate.

Kaijun Luo1, Qing Guo1, Yan Wang1, Daibing Luo2.   

Abstract

In the title compound, C7H9NO2, all non-H atoms are essentially coplanar [r.m.s. deviation = 0.032 Å]. The largest deviation from the plane of the pyridine ring is 0.105 (6) Å for the terminal C atom of the eth-oxy group. In the crystal, mol-ecules are linked by pairs of N-H⋯O hydrogen bonds, forming inversion dimers. These dimers are further linked by C-H⋯π inter-actions and weak π-π inter-actions between pyridine rings [centroid-centroid distance = 4.023 (1) Å].

Entities:  

Keywords:  6-eth­oxy­pyridin-1-ium-2-olate; C—H⋯π inter­actions; crystal structure; hydrogen bonding; zwitterion

Year:  2014        PMID: 25484792      PMCID: PMC4257288          DOI: 10.1107/S1600536814020224

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to 2-iodo-5-hy­droxy­pyridine derivatives and their applications, see: Cho et al. (2003 ▶); Hegmann et al. (2003 ▶); Savelon et al. (1998 ▶); Wang et al. (2012 ▶). For the synthesis of the title compound, see: Hutchinson et al. (2001 ▶); Seton et al. (2001 ▶).

Experimental

Crystal data

C7H9NO2 M = 139.15 Monoclinic, a = 8.3037 (11) Å b = 7.0999 (6) Å c = 12.0767 (15) Å β = 93.402 (13)° V = 710.74 (14) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.3 × 0.3 × 0.2 mm

Data collection

Agilent Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.606, T max = 1.000 2957 measured reflections 1452 independent reflections 949 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.150 S = 1.09 1452 reflections 96 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.33 e Å−3

Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814020224/zq2227sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814020224/zq2227Isup2.hkl Supporting information file. DOI: 10.1107/S1600536814020224/zq2227Isup3.txt Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814020224/zq2227Isup4.cml Click here for additional data file. . DOI: 10.1107/S1600536814020224/zq2227fig1.tif The mol­ecular structure of the title complex, with non-hydrogen atoms labels and 50% probability displacement ellipsoids. Click here for additional data file. b . DOI: 10.1107/S1600536814020224/zq2227fig2.tif Packing of the title compound viewed along the b direction. CCDC reference: 1023404 Additional supporting information: crystallographic information; 3D view; checkCIF report
C7H9NO2F(000) = 296
Mr = 139.15Dx = 1.300 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 809 reflections
a = 8.3037 (11) Åθ = 3.8–24.3°
b = 7.0999 (6) ŵ = 0.10 mm1
c = 12.0767 (15) ÅT = 293 K
β = 93.402 (13)°Block, white
V = 710.74 (14) Å30.3 × 0.3 × 0.2 mm
Z = 4
Agilent Xcalibur Eos diffractometer1452 independent reflections
Radiation source: Enhance (Mo) X-ray Source949 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.018
Detector resolution: 16.0874 pixels mm-1θmax = 26.4°, θmin = 3.1°
ω scansh = −9→10
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −5→8
Tmin = 0.606, Tmax = 1.000l = −7→15
2957 measured reflections
Refinement on F20 restraints
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.055w = 1/[σ2(Fo2) + (0.0675P)2 + 0.0301P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.150(Δ/σ)max = 0.001
S = 1.09Δρmax = 0.24 e Å3
1452 reflectionsΔρmin = −0.33 e Å3
96 parameters
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Reflections were merged by SHELXL according to the crystal class for the calculation of statistics and refinement.
xyzUiso*/Ueq
C10.6392 (2)0.3124 (3)0.59009 (17)0.0554 (5)
C20.7456 (3)0.1850 (3)0.64769 (19)0.0642 (6)
H20.77740.20640.72180.077*
C30.8004 (3)0.0333 (3)0.5951 (2)0.0688 (7)
H30.8694−0.04930.63440.083*
C40.7581 (3)−0.0052 (3)0.4841 (2)0.0663 (7)
H40.7979−0.11080.44920.080*
C50.6563 (2)0.1176 (2)0.42860 (18)0.0521 (5)
C60.6502 (3)−0.0472 (3)0.2572 (2)0.0683 (7)
H6A0.6240−0.16490.29280.082*
H6B0.7658−0.04310.24950.082*
C70.5627 (3)−0.0328 (4)0.1469 (2)0.0824 (8)
H7A0.5910−0.13760.10170.124*
H7B0.59190.08250.11170.124*
H7C0.4486−0.03380.15570.124*
N10.60093 (19)0.2701 (2)0.48106 (14)0.0507 (5)
H10.538 (3)0.350 (3)0.445 (2)0.082 (8)*
O10.58033 (19)0.4567 (2)0.63138 (12)0.0762 (5)
O20.60054 (17)0.11012 (17)0.32261 (12)0.0629 (5)
U11U22U33U12U13U23
C10.0558 (12)0.0567 (11)0.0530 (12)−0.0021 (9)−0.0032 (10)0.0008 (10)
C20.0651 (14)0.0644 (12)0.0619 (14)0.0015 (10)−0.0066 (11)0.0103 (11)
C30.0624 (14)0.0641 (13)0.0792 (17)0.0075 (11)−0.0027 (12)0.0185 (12)
C40.0646 (14)0.0521 (11)0.0828 (18)0.0098 (10)0.0096 (13)0.0026 (11)
C50.0504 (11)0.0462 (10)0.0603 (13)−0.0039 (8)0.0081 (10)−0.0007 (9)
C60.0732 (15)0.0593 (12)0.0738 (16)0.0059 (10)0.0173 (13)−0.0164 (11)
C70.0939 (19)0.0759 (15)0.0782 (18)0.0062 (13)0.0121 (15)−0.0260 (13)
N10.0508 (10)0.0472 (9)0.0536 (10)0.0040 (7)0.0000 (8)−0.0025 (8)
O10.0997 (13)0.0716 (10)0.0550 (10)0.0237 (9)−0.0148 (9)−0.0131 (7)
O20.0732 (10)0.0531 (8)0.0628 (10)0.0086 (6)0.0059 (8)−0.0118 (7)
C1—C21.418 (3)C5—O21.336 (2)
C1—N11.369 (2)C6—H6A0.9700
C1—O11.251 (2)C6—H6B0.9700
C2—H20.9300C6—C71.483 (3)
C2—C31.344 (3)C6—O21.442 (2)
C3—H30.9300C7—H7A0.9600
C3—C41.392 (3)C7—H7B0.9600
C4—H40.9300C7—H7C0.9600
C4—C51.363 (3)N1—H10.87 (3)
C5—N11.349 (2)
N1—C1—C2115.75 (19)C7—C6—H6A110.2
O1—C1—C2125.0 (2)C7—C6—H6B110.2
O1—C1—N1119.25 (17)O2—C6—H6A110.2
C1—C2—H2120.1O2—C6—H6B110.2
C3—C2—C1119.9 (2)O2—C6—C7107.33 (18)
C3—C2—H2120.1C6—C7—H7A109.5
C2—C3—H3118.7C6—C7—H7B109.5
C2—C3—C4122.6 (2)C6—C7—H7C109.5
C4—C3—H3118.7H7A—C7—H7B109.5
C3—C4—H4121.3H7A—C7—H7C109.5
C5—C4—C3117.5 (2)H7B—C7—H7C109.5
C5—C4—H4121.3C1—N1—H1116.0 (17)
N1—C5—C4120.1 (2)C5—N1—C1124.13 (18)
O2—C5—C4127.98 (19)C5—N1—H1119.9 (17)
O2—C5—N1111.91 (17)C5—O2—C6117.46 (16)
H6A—C6—H6B108.5
C1—C2—C3—C40.5 (3)C7—C6—O2—C5175.32 (18)
C2—C1—N1—C50.8 (3)N1—C1—C2—C3−0.7 (3)
C2—C3—C4—C5−0.3 (3)N1—C5—O2—C6−179.67 (16)
C3—C4—C5—N10.3 (3)O1—C1—C2—C3179.4 (2)
C3—C4—C5—O2179.6 (2)O1—C1—N1—C5−179.39 (18)
C4—C5—N1—C1−0.6 (3)O2—C5—N1—C1−179.95 (16)
C4—C5—O2—C61.0 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.87 (2)1.90 (2)2.762 (2)174 (2)
C7—H7A···Cgii0.962.903.792 (3)155
Table 1

Hydrogen-bond geometry (, )

Cg is the centroid of the N1,C1C5 ring.

DHA DHHA D A DHA
N1H1O1i 0.87(2)1.90(2)2.762(2)174(2)
C7H7A Cg ii 0.962.903.792(3)155

Symmetry codes: (i) ; (ii) .

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