| Literature DB >> 25484760 |
Sambasivarao Kotha1, Vital Seema1, Deepak Deodhar1, Mobin Shaikh1.
Abstract
The title compounds, C17H20O2 (1) and C17H18O2 (2), are allyl-ated caged compounds. In (1), the carbon atoms bearing the allyl groups are far apart [2.9417 (17) Å], hence the expected ring-closing metathesis (RCM) protocol failed to give a ring-closing product. When these carbon atoms are connected by a C-C bond as in (2), the distance between them is much smaller [1.611 (3) Å] and consequently the RCM process was successful. The caged carbon skeleton of (1) can be described as a fusion of four five-membered rings and one six-membered ring. All four five-membered rings exhibit envelope conformations. The structure of compound (2) consists of four five-membered rings, of which two are cyclo-penta-none rings bonded at the 2, 4 and 5 positions and linked at the 3-carbons by a methyl-ene bridge. It also consists of one four-membered and two six-membered rings. All four five-membered rings adopt envelope conformations. In the crystal of (1), mol-ecules are linked via C-H⋯O hydrogen bonds, forming sheets lying parallel to (010). In the crystal of (2), mol-ecules are linked via C-H⋯O hydrogen bonds forming chains along [100].Entities:
Keywords: Crystal structure; Diels–Alder reaction; [2 + 2] cycloadditions; caged compounds; crystal structure; pentacyclo [5.4.0.02,6.03,10.05,9]undecane (PCUD); ring-closing metathesis (RCM)
Year: 2014 PMID: 25484760 PMCID: PMC4257271 DOI: 10.1107/S1600536814023149
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
Figure 1Synthesis of cage systems (1) and (2).
Figure 2Various Grubbs catalysts used for ring-closing metathesis (RCM).
Figure 3A view of the molecular structure of compound (1), with atom labelling. Displacement ellipsoids are drawn at the 50% probability level.
Figure 4A view of the molecular structure of compound (2), with atom labelling. Displacement ellipsoids are drawn at the 50% probability level.
Figure 5A view along the b axis of the crystal packing of compound (1). Hydrogen bonds are shown as dashed lines (see Table 1 ▶ for details; only the H atoms involved in these hydrogen bonds are shown).
Hydrogen-bond geometry (, ) for (1)
|
|
| H |
|
|
|---|---|---|---|---|
| C8H8 | 0.95 | 2.42 | 3.3532(18) | 168 |
| C11H11O1ii | 1.00 | 2.49 | 3.4815(16) | 173 |
| C16H16 | 0.95 | 2.51 | 3.455(2) | 177 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 6A view along the c axis of the crystal packing of compound (2). Hydrogen bonds are shown as dashed lines (see Table 2 ▶ for details; only the H atoms involved in these hydrogen bonds are shown).
Hydrogen-bond geometry (, ) for (2)
|
|
| H |
|
|
|---|---|---|---|---|
| C9H9O2i | 1.00 | 2.44 | 3.412(3) | 165 |
| C15H15 | 0.99 | 2.43 | 3.383(3) | 160 |
Symmetry codes: (i) ; (ii) .
Experimental details
| (1) | (2) | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C17H20O2 | C17H18O2 |
|
| 256.33 | 254.31 |
| Crystal system, space group | Monoclinic, | Monoclinic, |
| Temperature (K) | 150 | 150 |
|
| 7.8006(3), 17.9581(7), 10.1032(4) | 8.7041(5), 18.3992(9), 9.0906(6) |
| () | 99.664(4) | 113.043(7) |
|
| 1395.21(9) | 1339.69(13) |
|
| 4 | 4 |
| Radiation type | Mo | Mo |
| (mm1) | 0.08 | 0.08 |
| Crystal size (mm) | 0.29 0.25 0.21 | 0.32 0.28 0.23 |
| Data collection | ||
| Diffractometer | Oxford Diffraction Xcalibur-S | Oxford Diffraction Xcalibur-S |
| Absorption correction | Multi-scan ( | Multi-scan ( |
|
| 0.978, 0.984 | 0.975, 0.982 |
| No. of measured, independent and observed [ | 9836, 2448, 1988 | 8644, 2356, 1625 |
|
| 0.020 | 0.036 |
| (sin /)max (1) | 0.595 | 0.595 |
| Refinement | ||
|
| 0.035, 0.099, 1.06 | 0.059, 0.188, 1.10 |
| No. of reflections | 2448 | 2356 |
| No. of parameters | 172 | 172 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
| max, min (e 3) | 0.20, 0.15 | 0.10, 0.34 |
Computer programs: CrysAlis CCD and CrysAlis RED (Oxford Diffraction, 2006 ▶), SHELXS97 and SHELXL97 (Sheldrick, 2008 ▶), Mercury (Macrae et al., 2008 ▶), PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶).
| C17H18O2 | |
| Monoclinic, | Melting point = 354.15–353.15 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 4211 reflections | |
| θ = 3.3–32.4° | |
| µ = 0.08 mm−1 | |
| β = 113.043 (7)° | |
| Block, colourless | |
| 0.32 × 0.28 × 0.23 mm |
| Oxford Diffraction Xcalibur-S diffractometer | 2356 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 1625 reflections with |
| Graphite monochromator | |
| Detector resolution: 15.9948 pixels mm-1 | θmax = 25.0°, θmin = 3.3° |
| ω/θ scans | |
| Absorption correction: multi-scan ( | |
| 8644 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2356 reflections | (Δ/σ)max < 0.001 |
| 172 parameters | Δρmax = 0.10 e Å−3 |
| 0 restraints | Δρmin = −0.34 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | −0.1367 (2) | 0.06672 (11) | 0.5971 (2) | 0.0424 (6) | |
| O2 | 0.2051 (2) | −0.02964 (10) | 0.9446 (2) | 0.0432 (6) | |
| C1 | −0.0014 (3) | 0.09420 (13) | 0.6688 (3) | 0.0304 (6) | |
| C2 | 0.0464 (3) | 0.14322 (12) | 0.8151 (3) | 0.0253 (6) | |
| C3 | 0.1827 (3) | 0.19321 (13) | 0.7979 (3) | 0.0248 (6) | |
| H3 | 0.1701 | 0.2466 | 0.8099 | 0.030* | |
| C4 | 0.2176 (3) | 0.16845 (14) | 0.6509 (3) | 0.0322 (6) | |
| H4 | 0.1684 | 0.2000 | 0.5541 | 0.039* | |
| C5 | 0.1520 (3) | 0.08931 (14) | 0.6303 (3) | 0.0336 (7) | |
| H5 | 0.1310 | 0.0678 | 0.5231 | 0.040* | |
| C6 | 0.2263 (3) | 0.03044 (14) | 0.9011 (3) | 0.0322 (6) | |
| C7 | 0.1904 (3) | 0.10269 (13) | 0.9618 (3) | 0.0268 (6) | |
| C8 | 0.3217 (3) | 0.15429 (13) | 0.9379 (3) | 0.0267 (6) | |
| H8 | 0.3899 | 0.1851 | 1.0313 | 0.032* | |
| C9 | 0.4181 (3) | 0.11108 (14) | 0.8554 (3) | 0.0331 (7) | |
| H9 | 0.5334 | 0.0955 | 0.9266 | 0.040* | |
| C10 | 0.2941 (3) | 0.04889 (14) | 0.7757 (3) | 0.0341 (7) | |
| H10 | 0.3454 | 0.0066 | 0.7425 | 0.041* | |
| C11 | 0.4068 (3) | 0.16081 (15) | 0.7176 (3) | 0.0377 (7) | |
| H11A | 0.4651 | 0.2077 | 0.7544 | 0.045* | |
| H11B | 0.4470 | 0.1372 | 0.6414 | 0.045* | |
| C12 | −0.1015 (3) | 0.17601 (13) | 0.8421 (3) | 0.0287 (6) | |
| H12A | −0.1786 | 0.1367 | 0.8435 | 0.034* | |
| H12B | −0.0609 | 0.2005 | 0.9475 | 0.034* | |
| C13 | −0.1941 (3) | 0.22985 (15) | 0.7137 (3) | 0.0345 (7) | |
| H13 | −0.2499 | 0.2115 | 0.6084 | 0.041* | |
| C14 | −0.2046 (4) | 0.29917 (16) | 0.7340 (4) | 0.0441 (8) | |
| H14A | −0.1508 | 0.3199 | 0.8374 | 0.053* | |
| H14B | −0.2662 | 0.3292 | 0.6456 | 0.053* | |
| C15 | 0.1757 (3) | 0.10004 (14) | 1.1231 (3) | 0.0338 (7) | |
| H15A | 0.1541 | 0.1495 | 1.1532 | 0.041* | |
| H15B | 0.0803 | 0.0687 | 1.1153 | 0.041* | |
| C16 | 0.3326 (4) | 0.0708 (2) | 1.2495 (4) | 0.0542 (9) | |
| H16 | 0.3445 | 0.0194 | 1.2551 | 0.065* | |
| C17 | 0.4476 (5) | 0.1061 (2) | 1.3466 (4) | 0.0664 (11) | |
| H17A | 0.4422 | 0.1577 | 1.3462 | 0.080* | |
| H17B | 0.5419 | 0.0818 | 1.4219 | 0.080* |
| O1 | 0.0307 (11) | 0.0387 (12) | 0.0478 (12) | −0.0057 (9) | 0.0047 (9) | −0.0107 (9) |
| O2 | 0.0398 (12) | 0.0226 (10) | 0.0648 (14) | 0.0051 (9) | 0.0180 (10) | 0.0092 (9) |
| C1 | 0.0301 (14) | 0.0206 (13) | 0.0343 (14) | 0.0013 (11) | 0.0059 (12) | 0.0028 (10) |
| C2 | 0.0248 (13) | 0.0201 (12) | 0.0297 (13) | 0.0025 (10) | 0.0092 (11) | 0.0032 (10) |
| C3 | 0.0277 (13) | 0.0180 (12) | 0.0290 (13) | −0.0009 (10) | 0.0113 (11) | 0.0000 (9) |
| C4 | 0.0360 (15) | 0.0319 (14) | 0.0305 (13) | 0.0004 (12) | 0.0149 (12) | 0.0021 (11) |
| C5 | 0.0365 (15) | 0.0324 (15) | 0.0312 (14) | −0.0005 (12) | 0.0125 (12) | −0.0092 (11) |
| C6 | 0.0226 (13) | 0.0251 (14) | 0.0426 (15) | 0.0024 (11) | 0.0058 (12) | 0.0022 (11) |
| C7 | 0.0254 (13) | 0.0222 (13) | 0.0309 (13) | 0.0027 (10) | 0.0089 (11) | 0.0022 (10) |
| C8 | 0.0254 (13) | 0.0237 (13) | 0.0285 (13) | −0.0019 (10) | 0.0080 (11) | −0.0041 (10) |
| C9 | 0.0238 (13) | 0.0363 (15) | 0.0395 (15) | 0.0017 (11) | 0.0127 (12) | −0.0053 (12) |
| C10 | 0.0314 (15) | 0.0274 (14) | 0.0450 (16) | 0.0048 (11) | 0.0166 (13) | −0.0066 (11) |
| C11 | 0.0366 (16) | 0.0394 (16) | 0.0446 (16) | −0.0006 (13) | 0.0239 (13) | −0.0019 (13) |
| C12 | 0.0260 (13) | 0.0249 (13) | 0.0359 (14) | 0.0003 (11) | 0.0127 (11) | 0.0030 (11) |
| C13 | 0.0261 (14) | 0.0387 (16) | 0.0367 (14) | 0.0062 (12) | 0.0100 (12) | 0.0040 (12) |
| C14 | 0.0397 (17) | 0.0329 (16) | 0.0550 (18) | 0.0086 (13) | 0.0136 (15) | 0.0089 (13) |
| C15 | 0.0332 (14) | 0.0334 (15) | 0.0358 (14) | 0.0057 (12) | 0.0146 (12) | 0.0085 (12) |
| C16 | 0.0457 (19) | 0.078 (2) | 0.0377 (17) | 0.0160 (18) | 0.0153 (15) | 0.0077 (17) |
| C17 | 0.059 (2) | 0.087 (3) | 0.051 (2) | 0.011 (2) | 0.0193 (19) | −0.006 (2) |
| O1—C1 | 1.211 (3) | C9—C11 | 1.523 (4) |
| O2—C6 | 1.212 (3) | C9—C10 | 1.545 (4) |
| C1—C5 | 1.510 (4) | C9—H9 | 1.0000 |
| C1—C2 | 1.524 (4) | C10—H10 | 1.0000 |
| C2—C12 | 1.526 (3) | C11—H11A | 0.9900 |
| C2—C3 | 1.557 (3) | C11—H11B | 0.9900 |
| C2—C7 | 1.611 (3) | C12—C13 | 1.502 (4) |
| C3—C8 | 1.546 (3) | C12—H12A | 0.9900 |
| C3—C4 | 1.550 (4) | C12—H12B | 0.9900 |
| C3—H3 | 1.0000 | C13—C14 | 1.297 (4) |
| C4—C11 | 1.522 (4) | C13—H13 | 0.9500 |
| C4—C5 | 1.549 (4) | C14—H14A | 0.9500 |
| C4—H4 | 1.0000 | C14—H14B | 0.9500 |
| C5—C10 | 1.597 (4) | C15—C16 | 1.498 (4) |
| C5—H5 | 1.0000 | C15—H15A | 0.9900 |
| C6—C10 | 1.513 (4) | C15—H15B | 0.9900 |
| C6—C7 | 1.518 (3) | C16—C17 | 1.229 (5) |
| C7—C15 | 1.522 (3) | C16—H16 | 0.9500 |
| C7—C8 | 1.565 (4) | C17—H17A | 0.9500 |
| C8—C9 | 1.546 (4) | C17—H17B | 0.9500 |
| C8—H8 | 1.0000 | ||
| O1—C1—C5 | 127.7 (2) | C11—C9—C10 | 104.6 (2) |
| O1—C1—C2 | 126.4 (3) | C11—C9—C8 | 102.6 (2) |
| C5—C1—C2 | 105.9 (2) | C10—C9—C8 | 101.3 (2) |
| C1—C2—C12 | 114.5 (2) | C11—C9—H9 | 115.5 |
| C1—C2—C3 | 102.7 (2) | C10—C9—H9 | 115.5 |
| C12—C2—C3 | 120.4 (2) | C8—C9—H9 | 115.5 |
| C1—C2—C7 | 107.84 (19) | C6—C10—C9 | 102.7 (2) |
| C12—C2—C7 | 118.8 (2) | C6—C10—C5 | 108.9 (2) |
| C3—C2—C7 | 88.83 (17) | C9—C10—C5 | 102.5 (2) |
| C8—C3—C4 | 102.6 (2) | C6—C10—H10 | 113.9 |
| C8—C3—C2 | 91.47 (18) | C9—C10—H10 | 113.9 |
| C4—C3—C2 | 109.09 (19) | C5—C10—H10 | 113.9 |
| C8—C3—H3 | 116.7 | C4—C11—C9 | 95.4 (2) |
| C4—C3—H3 | 116.7 | C4—C11—H11A | 112.7 |
| C2—C3—H3 | 116.7 | C9—C11—H11A | 112.7 |
| C11—C4—C5 | 104.6 (2) | C4—C11—H11B | 112.7 |
| C11—C4—C3 | 103.3 (2) | C9—C11—H11B | 112.7 |
| C5—C4—C3 | 101.1 (2) | H11A—C11—H11B | 110.1 |
| C11—C4—H4 | 115.3 | C13—C12—C2 | 111.4 (2) |
| C5—C4—H4 | 115.3 | C13—C12—H12A | 109.3 |
| C3—C4—H4 | 115.3 | C2—C12—H12A | 109.3 |
| C1—C5—C4 | 103.5 (2) | C13—C12—H12B | 109.3 |
| C1—C5—C10 | 107.7 (2) | C2—C12—H12B | 109.3 |
| C4—C5—C10 | 102.0 (2) | H12A—C12—H12B | 108.0 |
| C1—C5—H5 | 114.1 | C14—C13—C12 | 125.7 (3) |
| C4—C5—H5 | 114.1 | C14—C13—H13 | 117.1 |
| C10—C5—H5 | 114.1 | C12—C13—H13 | 117.1 |
| O2—C6—C10 | 127.2 (2) | C13—C14—H14A | 120.0 |
| O2—C6—C7 | 127.0 (2) | C13—C14—H14B | 120.0 |
| C10—C6—C7 | 105.9 (2) | H14A—C14—H14B | 120.0 |
| C6—C7—C15 | 115.4 (2) | C16—C15—C7 | 110.8 (2) |
| C6—C7—C8 | 102.5 (2) | C16—C15—H15A | 109.5 |
| C15—C7—C8 | 119.6 (2) | C7—C15—H15A | 109.5 |
| C6—C7—C2 | 108.00 (19) | C16—C15—H15B | 109.5 |
| C15—C7—C2 | 118.7 (2) | C7—C15—H15B | 109.5 |
| C8—C7—C2 | 88.77 (17) | H15A—C15—H15B | 108.1 |
| C3—C8—C9 | 103.7 (2) | C17—C16—C15 | 127.0 (4) |
| C3—C8—C7 | 90.93 (18) | C17—C16—H16 | 116.5 |
| C9—C8—C7 | 108.6 (2) | C15—C16—H16 | 116.5 |
| C3—C8—H8 | 116.7 | C16—C17—H17A | 120.0 |
| C9—C8—H8 | 116.7 | C16—C17—H17B | 120.0 |
| C7—C8—H8 | 116.7 | H17A—C17—H17B | 120.0 |
| O1—C1—C2—C12 | −17.7 (4) | C4—C3—C8—C9 | −0.8 (2) |
| C5—C1—C2—C12 | 160.6 (2) | C2—C3—C8—C9 | 109.1 (2) |
| O1—C1—C2—C3 | −150.1 (2) | C4—C3—C8—C7 | −110.27 (19) |
| C5—C1—C2—C3 | 28.2 (2) | C2—C3—C8—C7 | −0.32 (18) |
| O1—C1—C2—C7 | 117.0 (3) | C6—C7—C8—C3 | 108.48 (19) |
| C5—C1—C2—C7 | −64.7 (2) | C15—C7—C8—C3 | −122.4 (2) |
| C1—C2—C3—C8 | −107.72 (19) | C2—C7—C8—C3 | 0.31 (17) |
| C12—C2—C3—C8 | 123.5 (2) | C6—C7—C8—C9 | 3.6 (2) |
| C7—C2—C3—C8 | 0.31 (18) | C15—C7—C8—C9 | 132.8 (2) |
| C1—C2—C3—C4 | −3.8 (2) | C2—C7—C8—C9 | −104.5 (2) |
| C12—C2—C3—C4 | −132.6 (2) | C3—C8—C9—C11 | 34.2 (2) |
| C7—C2—C3—C4 | 104.2 (2) | C7—C8—C9—C11 | 129.9 (2) |
| C8—C3—C4—C11 | −32.9 (2) | C3—C8—C9—C10 | −73.7 (2) |
| C2—C3—C4—C11 | −129.0 (2) | C7—C8—C9—C10 | 22.0 (2) |
| C8—C3—C4—C5 | 75.2 (2) | O2—C6—C10—C9 | −135.8 (3) |
| C2—C3—C4—C5 | −20.9 (2) | C7—C6—C10—C9 | 44.1 (2) |
| O1—C1—C5—C4 | 135.6 (3) | O2—C6—C10—C5 | 116.1 (3) |
| C2—C1—C5—C4 | −42.6 (2) | C7—C6—C10—C5 | −64.0 (2) |
| O1—C1—C5—C10 | −116.8 (3) | C11—C9—C10—C6 | −145.8 (2) |
| C2—C1—C5—C10 | 64.9 (2) | C8—C9—C10—C6 | −39.4 (2) |
| C11—C4—C5—C1 | 145.1 (2) | C11—C9—C10—C5 | −32.8 (2) |
| C3—C4—C5—C1 | 38.0 (2) | C8—C9—C10—C5 | 73.5 (2) |
| C11—C4—C5—C10 | 33.3 (2) | C1—C5—C10—C6 | −0.5 (3) |
| C3—C4—C5—C10 | −73.8 (2) | C4—C5—C10—C6 | 108.0 (2) |
| O2—C6—C7—C15 | 19.1 (4) | C1—C5—C10—C9 | −108.8 (2) |
| C10—C6—C7—C15 | −160.8 (2) | C4—C5—C10—C9 | −0.3 (2) |
| O2—C6—C7—C8 | 150.9 (3) | C5—C4—C11—C9 | −52.5 (2) |
| C10—C6—C7—C8 | −29.1 (2) | C3—C4—C11—C9 | 53.0 (2) |
| O2—C6—C7—C2 | −116.4 (3) | C10—C9—C11—C4 | 52.2 (2) |
| C10—C6—C7—C2 | 63.7 (2) | C8—C9—C11—C4 | −53.2 (2) |
| C1—C2—C7—C6 | 0.0 (3) | C1—C2—C12—C13 | −67.8 (3) |
| C12—C2—C7—C6 | 132.4 (2) | C3—C2—C12—C13 | 55.5 (3) |
| C3—C2—C7—C6 | −103.0 (2) | C7—C2—C12—C13 | 162.7 (2) |
| C1—C2—C7—C15 | −133.8 (2) | C2—C12—C13—C14 | −114.1 (3) |
| C12—C2—C7—C15 | −1.3 (3) | C6—C7—C15—C16 | 58.3 (3) |
| C3—C2—C7—C15 | 123.2 (2) | C8—C7—C15—C16 | −64.7 (3) |
| C1—C2—C7—C8 | 102.7 (2) | C2—C7—C15—C16 | −171.2 (2) |
| C12—C2—C7—C8 | −124.9 (2) | C7—C15—C16—C17 | 98.4 (4) |
| C3—C2—C7—C8 | −0.31 (17) |
| H··· | ||||
| C9—H9···O2i | 1.00 | 2.44 | 3.412 (3) | 165 |
| C15—H15 | 0.99 | 2.43 | 3.383 (3) | 160 |