Literature DB >> 25484702

Crystal structure of 4-chloro-2-[(5-eth-oxy-1,3,4-thia-diazol-2-yl)meth-yl]-5-(piperidin-1-yl)pyridazin-3(2H)-one.

Hongsen Li1, Xinfeng Ren1, Ya Li1, Linjing Zhao1.   

Abstract

In the title mol-ecule, C14H18ClN5O2S, the six atoms of the 1,6-di-hydro-pyridazine ring are essentially coplanar (r.m.s. deviation = 0.008 Å), and the dihedral angle between this and the 1,3,4-thia-diazole ring is 62.06 (10)°. In the crystal, centrosymmetrically related mol-ecules are linked by inter-molecular C-H-O hydrogen bonding to form a supra-molecular dimer. The terminal ethyl group is statistically disordered over two positions.

Entities:  

Keywords:  C—H—O hydrogen bonding; crystal structure; pyridazinone derivatives

Year:  2014        PMID: 25484702      PMCID: PMC4257213          DOI: 10.1107/S1600536814020662

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyridazinone derivatives, see: Abouzid et al. (2008 ▶); Siddiqui et al. (2010 ▶), and for their synthesis, see: Wang et al. (2010 ▶); Zhang et al. (2002 ▶).

Experimental

Crystal data

C14H18ClN5O2S M = 355.84 Triclinic, a = 5.2840 (8) Å b = 11.0323 (16) Å c = 14.902 (2) Å α = 107.318 (2)° β = 91.590 (2)° γ = 99.528 (2)° V = 815.1 (2) Å3 Z = 2 Mo Kα radiation μ = 0.38 mm−1 T = 296 K 0.30 × 0.24 × 0.16 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.895, T max = 0.942 4244 measured reflections 2828 independent reflections 2490 reflections with I > 2σ(I) R int = 0.012

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.121 S = 1.58 2828 reflections 229 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.23 e Å−3

Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814020662/tk5340sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814020662/tk5340Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814020662/tk5340Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814020662/tk5340fig1.tif Mol­ecular structure of the title compound showing atom labelling and displacement ellipsoids at 50%. CCDC reference: 1024313 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H18ClN5O2SZ = 2
Mr = 355.84F(000) = 372
Triclinic, P1Dx = 1.450 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.2840 (8) ÅCell parameters from 2456 reflections
b = 11.0323 (16) Åθ = 2.8–27.3°
c = 14.902 (2) ŵ = 0.38 mm1
α = 107.318 (2)°T = 296 K
β = 91.590 (2)°Block, yellow
γ = 99.528 (2)°0.30 × 0.24 × 0.16 mm
V = 815.1 (2) Å3
Bruker APEXII CCD diffractometer2828 independent reflections
Radiation source: fine-focus sealed tube2490 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.012
φ and ω scansθmax = 25.1°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −6→6
Tmin = 0.895, Tmax = 0.942k = −13→13
4244 measured reflectionsl = −13→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 1.58w = 1/[σ2(Fo2) + (0.0546P)2] where P = (Fo2 + 2Fc2)/3
2828 reflections(Δ/σ)max = 0.050
229 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C11.1293 (4)0.40442 (18)0.64144 (14)0.0529 (5)
H1A0.99630.43620.68070.064*
H1B1.16200.45500.59840.064*
C21.3686 (5)0.4198 (2)0.70167 (19)0.0710 (7)
H2A1.42360.51000.73760.085*
H2B1.50430.39280.66210.085*
C31.3239 (5)0.3396 (2)0.76876 (18)0.0726 (7)
H3A1.48500.34480.80380.087*
H3B1.20370.37330.81350.087*
C41.2172 (5)0.2004 (2)0.71378 (17)0.0623 (6)
H4A1.34940.16330.67680.075*
H4B1.17190.15210.75760.075*
C50.9873 (5)0.1870 (2)0.65010 (17)0.0654 (6)
H5A0.93580.09730.61220.079*
H5B0.84610.21200.68730.079*
C60.8041 (4)0.24108 (16)0.34196 (13)0.0418 (4)
C70.9639 (3)0.28093 (16)0.42889 (13)0.0390 (4)
C80.8999 (4)0.23463 (16)0.50280 (13)0.0426 (4)
C90.6649 (4)0.14118 (19)0.48425 (14)0.0513 (5)
H90.61670.10650.53230.062*
C100.3987 (4)0.1095 (2)0.25530 (14)0.0517 (5)
H10A0.38530.18330.23400.062*
H10B0.23070.07830.27290.062*
C110.4730 (4)0.00539 (18)0.17587 (13)0.0452 (5)
C120.6399 (5)−0.1324 (2)0.05014 (15)0.0605 (6)
C13A0.6909 (17)−0.3381 (7)−0.0461 (7)0.074 (2)0.503 (13)
H13A0.6744−0.36540.00990.089*0.503 (13)
H13B0.5282−0.3668−0.08450.089*0.503 (13)
C14A0.9045 (12)−0.3878 (6)−0.1004 (7)0.083 (3)0.503 (13)
H14A0.9387−0.3461−0.14800.125*0.503 (13)
H14B0.8561−0.4794−0.12980.125*0.503 (13)
H14C1.0565−0.3701−0.05840.125*0.503 (13)
C13B0.7259 (16)−0.3012 (8)−0.0838 (6)0.071 (2)0.497 (13)
H13C0.8075−0.3014−0.14130.085*0.497 (13)
H13D0.5414−0.3283−0.09870.085*0.497 (13)
C14B0.8311 (17)−0.3870 (7)−0.0377 (8)0.086 (3)0.497 (13)
H14D1.0040−0.3483−0.01140.129*0.497 (13)
H14E0.8312−0.4692−0.08360.129*0.497 (13)
H14F0.7260−0.39870.01160.129*0.497 (13)
Cl11.24862 (9)0.38323 (4)0.42952 (4)0.0529 (2)
N11.0406 (3)0.26824 (15)0.58761 (11)0.0507 (4)
N20.5837 (3)0.15084 (14)0.33835 (11)0.0437 (4)
N30.5152 (3)0.10080 (16)0.40812 (12)0.0519 (4)
N40.3405 (4)−0.10968 (17)0.14941 (13)0.0585 (5)
N50.4391 (4)−0.19254 (17)0.07519 (14)0.0630 (5)
O10.8484 (3)0.27791 (13)0.27325 (10)0.0585 (4)
O20.7819 (4)−0.1833 (2)−0.01905 (13)0.0901 (6)
S10.73552 (11)0.02873 (5)0.11291 (4)0.0556 (2)
U11U22U33U12U13U23
C10.0616 (13)0.0406 (11)0.0504 (12)0.0058 (9)−0.0067 (10)0.0075 (9)
C20.0735 (16)0.0530 (13)0.0755 (16)−0.0080 (11)−0.0252 (13)0.0164 (12)
C30.0772 (17)0.0714 (15)0.0639 (15)0.0039 (12)−0.0229 (13)0.0205 (13)
C40.0673 (15)0.0634 (14)0.0622 (14)0.0080 (11)−0.0004 (11)0.0307 (12)
C50.0680 (15)0.0626 (14)0.0651 (14)−0.0112 (11)−0.0107 (12)0.0326 (12)
C60.0471 (11)0.0336 (9)0.0436 (11)0.0097 (8)0.0044 (8)0.0091 (8)
C70.0404 (10)0.0292 (8)0.0459 (10)0.0035 (7)0.0023 (8)0.0109 (7)
C80.0475 (11)0.0324 (9)0.0443 (11)0.0013 (7)−0.0012 (8)0.0102 (8)
C90.0562 (13)0.0474 (11)0.0436 (11)−0.0099 (9)−0.0005 (9)0.0145 (9)
C100.0438 (11)0.0568 (12)0.0496 (12)0.0116 (9)−0.0059 (9)0.0085 (9)
C110.0427 (11)0.0483 (11)0.0413 (10)0.0047 (8)−0.0079 (8)0.0117 (8)
C120.0638 (15)0.0613 (13)0.0476 (12)0.0168 (11)−0.0100 (11)0.0022 (10)
C13A0.088 (5)0.058 (4)0.058 (5)0.008 (3)0.015 (4)−0.006 (3)
C14A0.073 (4)0.068 (4)0.088 (6)0.010 (3)0.024 (4)−0.007 (3)
C13B0.080 (4)0.073 (5)0.045 (4)0.009 (3)−0.002 (3)0.000 (3)
C14B0.090 (6)0.075 (4)0.085 (6)0.010 (4)−0.001 (5)0.017 (4)
Cl10.0456 (3)0.0449 (3)0.0658 (4)−0.0037 (2)0.0049 (2)0.0198 (2)
N10.0600 (11)0.0404 (9)0.0476 (10)−0.0061 (7)−0.0102 (8)0.0170 (7)
N20.0423 (9)0.0424 (8)0.0409 (9)0.0042 (7)−0.0018 (7)0.0069 (7)
N30.0518 (10)0.0487 (9)0.0467 (10)−0.0064 (7)0.0007 (8)0.0107 (8)
N40.0539 (11)0.0553 (11)0.0567 (11)−0.0004 (8)−0.0072 (9)0.0092 (9)
N50.0615 (12)0.0521 (11)0.0610 (12)0.0042 (9)−0.0115 (10)0.0007 (9)
O10.0772 (10)0.0514 (8)0.0479 (8)0.0030 (7)−0.0008 (7)0.0220 (7)
O20.0843 (13)0.0960 (14)0.0663 (11)0.0270 (11)0.0062 (10)−0.0163 (10)
S10.0575 (4)0.0545 (3)0.0502 (3)0.0046 (2)0.0026 (3)0.0120 (2)
C1—N11.466 (2)C10—N21.464 (2)
C1—C21.486 (3)C10—C111.496 (3)
C1—H1A0.9700C10—H10A0.9700
C1—H1B0.9700C10—H10B0.9700
C2—C31.520 (3)C11—N41.284 (3)
C2—H2A0.9700C11—S11.723 (2)
C2—H2B0.9700C12—N51.282 (3)
C3—C41.512 (3)C12—O21.334 (3)
C3—H3A0.9700C12—S11.725 (2)
C3—H3B0.9700C13A—C14A1.491 (13)
C4—C51.480 (3)C13A—O21.619 (8)
C4—H4A0.9700C13A—H13A0.9700
C4—H4B0.9700C13A—H13B0.9700
C5—N11.476 (2)C14A—H14A0.9600
C5—H5A0.9700C14A—H14B0.9600
C5—H5B0.9700C14A—H14C0.9600
C6—O11.224 (2)C13B—O21.349 (7)
C6—N21.390 (2)C13B—C14B1.489 (14)
C6—C71.436 (3)C13B—H13C0.9700
C7—C81.374 (3)C13B—H13D0.9700
C7—Cl11.7228 (18)C14B—H14D0.9600
C8—N11.366 (2)C14B—H14E0.9600
C8—C91.438 (3)C14B—H14F0.9600
C9—N31.282 (3)N2—N31.347 (2)
C9—H90.9300N4—N51.385 (3)
N1—C1—C2110.36 (17)N2—C10—H10A109.0
N1—C1—H1A109.6C11—C10—H10A109.0
C2—C1—H1A109.6N2—C10—H10B109.0
N1—C1—H1B109.6C11—C10—H10B109.0
C2—C1—H1B109.6H10A—C10—H10B107.8
H1A—C1—H1B108.1N4—C11—C10121.30 (19)
C1—C2—C3110.7 (2)N4—C11—S1114.96 (16)
C1—C2—H2A109.5C10—C11—S1123.74 (14)
C3—C2—H2A109.5N5—C12—O2126.0 (2)
C1—C2—H2B109.5N5—C12—S1116.59 (17)
C3—C2—H2B109.5O2—C12—S1117.4 (2)
H2A—C2—H2B108.1C14A—C13A—O2102.4 (7)
C4—C3—C2109.89 (19)C14A—C13A—H13A111.3
C4—C3—H3A109.7O2—C13A—H13A111.3
C2—C3—H3A109.7C14A—C13A—H13B111.3
C4—C3—H3B109.7O2—C13A—H13B111.3
C2—C3—H3B109.7H13A—C13A—H13B109.2
H3A—C3—H3B108.2O2—C13B—C14B104.2 (7)
C5—C4—C3112.46 (19)O2—C13B—H13C110.9
C5—C4—H4A109.1C14B—C13B—H13C110.9
C3—C4—H4A109.1O2—C13B—H13D110.9
C5—C4—H4B109.1C14B—C13B—H13D110.9
C3—C4—H4B109.1H13C—C13B—H13D108.9
H4A—C4—H4B107.8C13B—C14B—H14D109.5
N1—C5—C4111.07 (17)C13B—C14B—H14E109.5
N1—C5—H5A109.4H14D—C14B—H14E109.5
C4—C5—H5A109.4C13B—C14B—H14F109.5
N1—C5—H5B109.4H14D—C14B—H14F109.5
C4—C5—H5B109.4H14E—C14B—H14F109.5
H5A—C5—H5B108.0C8—N1—C1120.60 (15)
O1—C6—N2119.39 (17)C8—N1—C5119.35 (15)
O1—C6—C7125.93 (18)C1—N1—C5111.72 (16)
N2—C6—C7114.67 (16)N3—N2—C6125.32 (15)
C8—C7—C6122.23 (17)N3—N2—C10115.33 (15)
C8—C7—Cl1123.29 (14)C6—N2—C10119.26 (16)
C6—C7—Cl1114.37 (14)C9—N3—N2116.97 (16)
N1—C8—C7125.69 (17)C11—N4—N5113.00 (19)
N1—C8—C9120.06 (17)C12—N5—N4110.34 (17)
C7—C8—C9114.23 (17)C12—O2—C13B127.2 (5)
N3—C9—C8126.57 (19)C12—O2—C13A105.7 (4)
N3—C9—H9116.7C13B—O2—C13A29.3 (3)
C8—C9—H9116.7C11—S1—C1285.12 (11)
N2—C10—C11112.73 (15)
N1—C1—C2—C3−58.3 (3)C7—C6—N2—N3−0.2 (3)
C1—C2—C3—C454.5 (3)O1—C6—N2—C10−4.9 (3)
C2—C3—C4—C5−52.6 (3)C7—C6—N2—C10176.21 (15)
C3—C4—C5—N153.7 (3)C11—C10—N2—N3−100.33 (19)
O1—C6—C7—C8−179.95 (18)C11—C10—N2—C682.9 (2)
N2—C6—C7—C8−1.1 (3)C8—C9—N3—N2−0.1 (3)
O1—C6—C7—Cl1−3.6 (2)C6—N2—N3—C90.8 (3)
N2—C6—C7—Cl1175.26 (12)C10—N2—N3—C9−175.75 (18)
C6—C7—C8—N1−179.63 (17)C10—C11—N4—N5−179.86 (16)
Cl1—C7—C8—N14.3 (3)S1—C11—N4—N50.5 (2)
C6—C7—C8—C91.6 (3)O2—C12—N5—N4180.0 (2)
Cl1—C7—C8—C9−174.41 (14)S1—C12—N5—N40.7 (2)
N1—C8—C9—N3−179.9 (2)C11—N4—N5—C12−0.8 (3)
C7—C8—C9—N3−1.0 (3)N5—C12—O2—C13B9.5 (7)
N2—C10—C11—N4112.2 (2)S1—C12—O2—C13B−171.2 (5)
N2—C10—C11—S1−68.2 (2)N5—C12—O2—C13A−13.1 (5)
C7—C8—N1—C150.6 (3)S1—C12—O2—C13A166.2 (4)
C9—C8—N1—C1−130.8 (2)C14B—C13B—O2—C12−87.8 (7)
C7—C8—N1—C5−163.8 (2)C14B—C13B—O2—C13A−38.9 (11)
C9—C8—N1—C514.9 (3)C14A—C13A—O2—C12−163.5 (7)
C2—C1—N1—C8−152.6 (2)C14A—C13A—O2—C13B55.1 (11)
C2—C1—N1—C559.4 (2)N4—C11—S1—C12−0.12 (17)
C4—C5—N1—C8154.6 (2)C10—C11—S1—C12−179.72 (17)
C4—C5—N1—C1−56.8 (3)N5—C12—S1—C11−0.36 (18)
O1—C6—N2—N3178.74 (16)O2—C12—S1—C11−179.71 (19)
D—H···AD—HH···AD···AD—H···A
C14A—H14A···O1i0.962.453.366 (11)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C14A—H14A⋯O1i 0.962.453.366 (11)160

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, characterization and antihypertensive activity of pyridazinone derivatives.

Authors:  Anees A Siddiqui; Ravinesh Mishra; Mohammad Shaharyar
Journal:  Eur J Med Chem       Date:  2010-02-06       Impact factor: 6.514

3.  Pyridazinone derivatives: design, synthesis, and in vitro vasorelaxant activity.

Authors:  Khaled Abouzid; Maha Abdel Hakeem; Omnya Khalil; Yosria Maklad
Journal:  Bioorg Med Chem       Date:  2007-09-19       Impact factor: 3.641

  3 in total
  1 in total

1.  Crystal structure, Hirshfeld surface analysis and DFT studies of 6-[(E)-2-(thio-phen-2-yl)ethenyl]-4,5-di-hydro-pyridazin-3(2H)-one.

Authors:  Said Daoui; Emine Berrin Çınar; Fouad El Kalai; Rafik Saddik; Necmi Dege; Khalid Karrouchi; Noureddine Benchat
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-11-15
  1 in total

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