Literature DB >> 25484697

Crystal structure of 4-{[(1H-1,2,4-triazol-1-yl)meth-yl]sulfan-yl}phenol.

Yong-Le Zhang1, Chuang Zhang1, Wei Guo1, Jing Wang1.   

Abstract

In the title compound, C9H9N3OS, the plane of the benzene ring forms a dihedral angle of 33.40 (5)° with that of the triazole group. In the crystal, mol-ecules are linked by O-H⋯N hydrogen bonds involving the phenol -OH group and one of the unsubstituted N atoms of the triazole ring, resulting in chains along [010]. These chains are further extended into a layer parallel to (001) by weak C-H⋯N hydrogen-bond inter-actions. Aromatic π-π stacking [centroid-centroid separation = 3.556 (1) Å] between the triazole rings links the layers into a three-dimensional network.

Entities:  

Keywords:  1,2,4-triazole derivative; biological activity; crystal structure; hydrogen bonding; π–π stacking

Year:  2014        PMID: 25484697      PMCID: PMC4257201          DOI: 10.1107/S1600536814019965

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of related compounds, see: Sidwell et al. (1972 ▶); Khan et al. (2010 ▶); Xu et al. (2011 ▶); Jubie et al. (2011 ▶); Patel et al. (2013 ▶); Salgın-Gökşen et al. (2007 ▶); Lin et al. (2005 ▶); Coucouvanis (2007 ▶).

Experimental

Crystal data

C9H9N3OS M = 207.25 Monoclinic, a = 5.3975 (10) Å b = 10.0099 (19) Å c = 18.311 (3) Å β = 91.010 (3)° V = 989.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 296 K 0.28 × 0.22 × 0.20 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.922, T max = 0.943 4977 measured reflections 1755 independent reflections 1453 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.077 S = 1.05 1755 reflections 128 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.17 e Å−3

Data collection: APEX2 (Bruker, 2003 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814019965/ds2243sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814019965/ds2243Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814019965/ds2243Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814019965/ds2243fig1.tif The mol­ecular structure of the title compound with the atom numbering scheme. The displacement ellipsoids are drawn at the 40% probability level. Click here for additional data file. . DOI: 10.1107/S1600536814019965/ds2243fig2.tif A view of the hydrogen bonded polymeric layer. The hydrogen bonds are shown as dashed lines. CCDC reference: 1022888 Additional supporting information: crystallographic information; 3D view; checkCIF report
C9H9N3OSF(000) = 432
Mr = 207.25Dx = 1.392 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1691 reflections
a = 5.3975 (10) Åθ = 2.3–23.8°
b = 10.0099 (19) ŵ = 0.30 mm1
c = 18.311 (3) ÅT = 296 K
β = 91.010 (3)°Strip, colorless
V = 989.2 (3) Å30.28 × 0.22 × 0.20 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer1755 independent reflections
Radiation source: fine-focus sealed tube1453 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
phi and ω scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −6→6
Tmin = 0.922, Tmax = 0.943k = −11→11
4977 measured reflectionsl = −18→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.077H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0294P)2 + 0.2664P] where P = (Fo2 + 2Fc2)/3
1755 reflections(Δ/σ)max < 0.001
128 parametersΔρmax = 0.14 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.66005 (10)0.44273 (5)0.08502 (3)0.05715 (18)
O11.2294 (3)0.31388 (12)0.35509 (7)0.0530 (4)
H11.32330.37470.36710.080*
N10.8498 (2)0.20284 (13)0.04543 (7)0.0369 (3)
N20.6462 (2)0.12317 (15)0.04545 (8)0.0450 (4)
N30.9755 (3)0.01570 (15)0.09366 (8)0.0475 (4)
C10.7326 (3)0.01291 (19)0.07461 (9)0.0461 (4)
H1A0.6339−0.06200.08170.055*
C21.0418 (3)0.13729 (18)0.07465 (9)0.0440 (4)
H21.20040.17240.08080.053*
C30.8344 (3)0.34022 (18)0.02238 (10)0.0483 (5)
H3A0.75610.3442−0.02570.058*
H3B1.00060.37620.01850.058*
C40.8297 (3)0.40921 (17)0.16692 (9)0.0436 (4)
C50.7646 (3)0.30194 (19)0.21040 (10)0.0487 (5)
H50.62810.24990.19740.058*
C60.9001 (4)0.27158 (18)0.27266 (10)0.0487 (5)
H60.85490.19900.30120.058*
C71.1036 (3)0.34846 (16)0.29307 (9)0.0403 (4)
C81.1682 (3)0.45690 (18)0.25025 (10)0.0458 (4)
H81.30350.50960.26360.055*
C91.0315 (4)0.48657 (18)0.18780 (10)0.0477 (5)
H91.07570.55950.15940.057*
U11U22U33U12U13U23
S10.0629 (3)0.0550 (3)0.0531 (3)0.0208 (2)−0.0116 (2)−0.0047 (2)
O10.0666 (9)0.0444 (7)0.0476 (7)−0.0068 (6)−0.0120 (6)0.0013 (6)
N10.0317 (7)0.0419 (8)0.0370 (8)−0.0003 (6)−0.0013 (6)−0.0019 (6)
N20.0338 (8)0.0530 (9)0.0481 (9)−0.0058 (7)−0.0062 (6)−0.0003 (7)
N30.0478 (9)0.0500 (9)0.0443 (9)0.0054 (7)−0.0067 (7)0.0001 (7)
C10.0470 (11)0.0484 (11)0.0427 (10)−0.0062 (8)−0.0011 (8)0.0010 (8)
C20.0309 (9)0.0542 (12)0.0466 (10)0.0011 (8)−0.0041 (7)−0.0057 (9)
C30.0553 (11)0.0473 (11)0.0424 (10)0.0003 (9)−0.0001 (8)0.0043 (8)
C40.0471 (10)0.0402 (10)0.0434 (10)0.0082 (8)−0.0015 (8)−0.0072 (8)
C50.0476 (10)0.0489 (11)0.0496 (11)−0.0088 (8)−0.0010 (8)−0.0080 (9)
C60.0609 (12)0.0402 (10)0.0449 (10)−0.0115 (9)0.0023 (9)0.0005 (8)
C70.0473 (10)0.0369 (9)0.0366 (9)0.0017 (8)0.0012 (7)−0.0057 (7)
C80.0463 (10)0.0414 (10)0.0495 (11)−0.0077 (8)−0.0002 (8)−0.0027 (8)
C90.0583 (11)0.0376 (10)0.0473 (11)−0.0001 (8)0.0044 (9)0.0021 (8)
S1—C41.7753 (18)C3—H3A0.9700
S1—C31.8146 (18)C3—H3B0.9700
O1—C71.358 (2)C4—C91.385 (3)
O1—H10.8200C4—C51.386 (3)
N1—C21.331 (2)C5—C61.378 (3)
N1—N21.3578 (18)C5—H50.9300
N1—C31.440 (2)C6—C71.387 (2)
N2—C11.308 (2)C6—H60.9300
N3—C21.317 (2)C7—C81.387 (2)
N3—C11.351 (2)C8—C91.382 (2)
C1—H1A0.9300C8—H80.9300
C2—H20.9300C9—H90.9300
C4—S1—C399.29 (8)C9—C4—C5118.74 (17)
C7—O1—H1109.5C9—C4—S1121.27 (14)
C2—N1—N2109.56 (14)C5—C4—S1119.97 (14)
C2—N1—C3128.98 (15)C6—C5—C4120.68 (17)
N2—N1—C3121.22 (14)C6—C5—H5119.7
C1—N2—N1102.31 (13)C4—C5—H5119.7
C2—N3—C1102.59 (15)C5—C6—C7120.46 (17)
N2—C1—N3115.15 (16)C5—C6—H6119.8
N2—C1—H1A122.4C7—C6—H6119.8
N3—C1—H1A122.4O1—C7—C6117.77 (15)
N3—C2—N1110.40 (15)O1—C7—C8123.04 (15)
N3—C2—H2124.8C6—C7—C8119.19 (16)
N1—C2—H2124.8C9—C8—C7120.00 (17)
N1—C3—S1112.49 (12)C9—C8—H8120.0
N1—C3—H3A109.1C7—C8—H8120.0
S1—C3—H3A109.1C8—C9—C4120.93 (17)
N1—C3—H3B109.1C8—C9—H9119.5
S1—C3—H3B109.1C4—C9—H9119.5
H3A—C3—H3B107.8
C2—N1—N2—C1−0.58 (18)C3—S1—C4—C5−88.92 (16)
C3—N1—N2—C1−175.34 (14)C9—C4—C5—C6−0.9 (3)
N1—N2—C1—N30.3 (2)S1—C4—C5—C6177.54 (14)
C2—N3—C1—N20.1 (2)C4—C5—C6—C70.3 (3)
C1—N3—C2—N1−0.45 (19)C5—C6—C7—O1179.81 (16)
N2—N1—C2—N30.68 (19)C5—C6—C7—C80.4 (3)
C3—N1—C2—N3174.91 (15)O1—C7—C8—C9−179.87 (16)
C2—N1—C3—S1−105.58 (18)C6—C7—C8—C9−0.5 (3)
N2—N1—C3—S168.07 (18)C7—C8—C9—C4−0.1 (3)
C4—S1—C3—N155.54 (14)C5—C4—C9—C80.8 (3)
C3—S1—C4—C989.51 (16)S1—C4—C9—C8−177.62 (13)
D—H···AD—HH···AD···AD—H···A
O1—H1···N3i0.821.912.7290 (19)173
C2—H2···N2ii0.932.553.318 (2)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N3i 0.821.912.7290 (19)173
C2—H2⋯N2ii 0.932.553.318 (2)140

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Design, synthesis and antifungal activities of novel 1,2,4-triazole derivatives.

Authors:  Jianming Xu; Yongbing Cao; Jun Zhang; Shichong Yu; Yan Zou; Xiaoyun Chai; Qiuye Wu; Dazhi Zhang; Yuanying Jiang; Qingyan Sun
Journal:  Eur J Med Chem       Date:  2011-02-24       Impact factor: 6.514

3.  Synthesis and biological evaluation of some schiff bases of [4-(amino)-5-phenyl-4H-1, 2,4-triazole-3-thiol].

Authors:  Selvaraj Jubie; Pranabesh Sikdar; Shanish Antony; Rajagopal Kalirajan; Byran Gowramma; Subramanian Gomathy; Kannan Elango
Journal:  Pak J Pharm Sci       Date:  2011-04       Impact factor: 0.684

4.  Synthesis, antioxidant activities and urease inhibition of some new 1,2,4-triazole and 1,3,4-thiadiazole derivatives.

Authors:  Imtiaz Khan; Sajid Ali; Shahid Hameed; Nasim Hasan Rama; Muhammad Tahir Hussain; Abdul Wadood; Reaz Uddin; Zaheer Ul-Haq; Ajmal Khan; Sajjad Ali; M Iqbal Choudhary
Journal:  Eur J Med Chem       Date:  2010-08-18       Impact factor: 6.514

5.  Broad-spectrum antiviral activity of Virazole: 1-beta-D-ribofuranosyl-1,2,4-triazole-3-carboxamide.

Authors:  R W Sidwell; J H Huffman; G P Khare; L B Allen; J T Witkowski; R K Robins
Journal:  Science       Date:  1972-08-25       Impact factor: 47.728

6.  1-Acylthiosemicarbazides, 1,2,4-triazole-5(4H)-thiones, 1,3,4-thiadiazoles and hydrazones containing 5-methyl-2-benzoxazolinones: synthesis, analgesic-anti-inflammatory and antimicrobial activities.

Authors:  Umut Salgin-Gökşen; Nesrin Gökhan-Kelekçi; Ozgür Göktaş; Yavuz Köysal; Ekrem Kiliç; Samil Işik; Göknur Aktay; Meral Ozalp
Journal:  Bioorg Med Chem       Date:  2007-06-08       Impact factor: 3.641

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.