Literature DB >> 25484684

Crystal structure of 4-amino-1-benzyl-1,2,4-triazolin-5-one.

Gerhard Laus1, Volker Kahlenberg2, Herwig Schottenberger1.   

Abstract

The title compound, C9H10N4O, was obtained unintentionally by hydrolysis of 4-amino-1-benzyl-5-methyl-sulfanyl-1,2,4-triazolium tetra-fluoro-borate in the presence of sodium azide. In the crystal, alternating layers of polar amino-triazolinone and apolar benzene moieties are observed. N-H⋯O hydrogen bonds between the amino and carbonyl groups form infinite chains along [010]. These infinite chains are linked by additional C-H⋯O contacts.

Entities:  

Keywords:  1,2,4-triazolin-5-one; crystal structure; hydrogen bonding

Year:  2014        PMID: 25484684      PMCID: PMC4257189          DOI: 10.1107/S160053681401931X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological activity of 1,2,4-triazoles, see: Sheng et al. (2011 ▶); Singla & Bhat (2010 ▶); Dayan et al. (2009 ▶); Li et al. (2003 ▶); Todoulou et al. (1994 ▶). For related structures, see: Thamotharan et al. (2003 ▶); Kaur et al. (2013 ▶); Sahin et al. (2014 ▶). For details of the synthesis, see: Becker et al. (1973a ▶,b ▶). For a description of the Cambridge Structural Database, see: Groom & Allen (2014 ▶).

Experimental

Crystal data

C9H10N4O M = 190.21 Monoclinic, a = 18.0861 (8) Å b = 4.1690 (2) Å c = 12.3694 (6) Å β = 104.003 (5)° V = 904.95 (7) Å3 Z = 4 Cu Kα radiation μ = 0.80 mm−1 T = 173 K 0.2 × 0.2 × 0.08 mm

Data collection

Oxford Diffraction Xcalibur (Ruby, Gemini ultra) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.867, T max = 1 7377 measured reflections 1613 independent reflections 1448 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.092 S = 1.03 1613 reflections 133 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.14 e Å−3

Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2002 (Burla et al., 2002 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681401931X/fj2680sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681401931X/fj2680Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S160053681401931X/fj2680Isup3.mol Click here for additional data file. Supporting information file. DOI: 10.1107/S160053681401931X/fj2680Isup4.cml Click here for additional data file. . DOI: 10.1107/S160053681401931X/fj2680fig1.tif The mol­ecular structure of the title compound, with atom labels and 50% probability displacement ellipsoids for non-H atoms. Click here for additional data file. . DOI: 10.1107/S160053681401931X/fj2680fig2.tif Alternating layers of polar amino­triazolinone and apolar benzene moieties. Click here for additional data file. . DOI: 10.1107/S160053681401931X/fj2680fig3.tif Arrangement of the triazole rings parallel to (13 4 ) and ( 4 3) planes. Click here for additional data file. x y z x y z . DOI: 10.1107/S160053681401931X/fj2680fig4.tif Hydrogen bonds between the amino and carbonyl groups form infinite chains. Symmetry operators (i): 1 − x, −1 − y, 2 − z; (ii): 1 − x, −y, 2 − z. CCDC reference: 1021229 Additional supporting information: crystallographic information; 3D view; checkCIF report
C9H10N4OF(000) = 400
Mr = 190.21Dx = 1.396 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.5418 Å
Hall symbol: -P 2ybcCell parameters from 4064 reflections
a = 18.0861 (8) Åθ = 3.7–67.9°
b = 4.1690 (2) ŵ = 0.80 mm1
c = 12.3694 (6) ÅT = 173 K
β = 104.003 (5)°Plate, colourless
V = 904.95 (7) Å30.2 × 0.2 × 0.08 mm
Z = 4
Oxford Diffraction Xcalibur (Ruby, Gemini ultra) diffractometer1613 independent reflections
Graphite monochromator1448 reflections with I > 2σ(I)
Detector resolution: 10.3575 pixels mm-1Rint = 0.030
ω scansθmax = 68.0°, θmin = 5.0°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)h = −21→21
Tmin = 0.867, Tmax = 1k = −4→4
7377 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0489P)2 + 0.2066P] where P = (Fo2 + 2Fc2)/3
1613 reflections(Δ/σ)max = 0.001
133 parametersΔρmax = 0.17 e Å3
2 restraintsΔρmin = −0.14 e Å3
Experimental. Absorption correction: CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.34.44 (release 25-10-2010 CrysAlis171 .NET) (compiled Oct 25 2010,18:11:34) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.41353 (5)−0.0910 (2)1.01696 (7)0.0378 (3)
N30.47943 (7)−0.4111 (3)0.84565 (10)0.0398 (3)
H310.5197 (9)−0.283 (4)0.8730 (13)0.048*
H320.4789 (10)−0.550 (4)0.9007 (12)0.048*
N10.32531 (6)0.0899 (3)0.85723 (8)0.0315 (3)
N40.41310 (6)−0.2253 (2)0.83245 (8)0.0301 (3)
N20.31212 (6)0.0442 (3)0.74333 (9)0.0376 (3)
C10.38691 (7)−0.0749 (3)0.91540 (10)0.0290 (3)
C50.14844 (8)0.0222 (3)0.81353 (11)0.0368 (3)
H50.15790.07110.7430.044*
C40.20132 (7)0.1088 (3)0.91021 (11)0.0322 (3)
C60.08204 (8)−0.1351 (4)0.81894 (12)0.0404 (3)
H60.0465−0.19670.75230.049*
C70.06730 (8)−0.2024 (4)0.92066 (13)0.0448 (4)
H70.0215−0.30820.92430.054*
C90.18659 (8)0.0385 (4)1.01228 (12)0.0417 (3)
H90.22250.09571.07910.05*
C20.36666 (7)−0.1467 (3)0.73250 (10)0.0349 (3)
H20.3732−0.22210.66290.042*
C30.27350 (7)0.2839 (3)0.90400 (12)0.0384 (3)
H3A0.25960.47880.85780.046*
H3B0.30030.35340.97990.046*
C80.11940 (9)−0.1154 (4)1.01708 (13)0.0492 (4)
H80.1093−0.1611.08740.059*
U11U22U33U12U13U23
O10.0376 (5)0.0452 (6)0.0301 (5)−0.0017 (4)0.0073 (4)0.0004 (4)
N30.0338 (6)0.0376 (7)0.0490 (7)0.0064 (5)0.0116 (5)0.0002 (5)
N10.0302 (5)0.0293 (6)0.0356 (6)−0.0001 (4)0.0094 (4)0.0003 (4)
N40.0291 (5)0.0287 (6)0.0338 (5)−0.0001 (4)0.0102 (4)−0.0002 (4)
N20.0363 (6)0.0427 (7)0.0332 (6)0.0007 (5)0.0070 (5)0.0045 (5)
C10.0293 (6)0.0255 (6)0.0336 (6)−0.0050 (5)0.0101 (5)0.0009 (5)
C50.0363 (7)0.0378 (7)0.0369 (7)0.0016 (6)0.0101 (5)0.0006 (6)
C40.0308 (6)0.0256 (7)0.0406 (7)0.0052 (5)0.0093 (5)−0.0033 (5)
C60.0330 (7)0.0420 (8)0.0446 (8)−0.0002 (6)0.0060 (6)−0.0033 (6)
C70.0363 (7)0.0423 (8)0.0592 (9)−0.0018 (6)0.0181 (6)0.0035 (7)
C90.0394 (7)0.0463 (8)0.0379 (7)0.0050 (6)0.0065 (6)−0.0040 (6)
C20.0345 (7)0.0402 (8)0.0310 (6)−0.0022 (6)0.0097 (5)−0.0003 (5)
C30.0345 (7)0.0289 (7)0.0533 (8)0.0005 (5)0.0136 (6)−0.0073 (6)
C80.0507 (9)0.0584 (10)0.0428 (8)0.0025 (7)0.0197 (7)0.0076 (7)
O1—C11.2335 (15)C4—C91.383 (2)
N3—N41.4040 (15)C4—C31.5138 (18)
N3—H310.900 (14)C6—C71.377 (2)
N3—H320.895 (14)C6—H60.95
N1—C11.3577 (17)C7—C81.378 (2)
N1—N21.3840 (15)C7—H70.95
N1—C31.4592 (16)C9—C81.388 (2)
N4—C21.3561 (17)C9—H90.95
N4—C11.3803 (16)C2—H20.95
N2—C21.2993 (18)C3—H3A0.99
C5—C61.384 (2)C3—H3B0.99
C5—C41.3861 (19)C8—H80.95
C5—H50.95
N4—N3—H31107.9 (11)C7—C6—H6119.9
N4—N3—H32106.2 (11)C5—C6—H6119.9
H31—N3—H32104.7 (15)C6—C7—C8119.63 (13)
C1—N1—N2112.77 (10)C6—C7—H7120.2
C1—N1—C3126.43 (11)C8—C7—H7120.2
N2—N1—C3120.72 (10)C4—C9—C8120.05 (13)
C2—N4—C1108.65 (10)C4—C9—H9120
C2—N4—N3124.24 (11)C8—C9—H9120
C1—N4—N3126.97 (11)N2—C2—N4111.85 (11)
C2—N2—N1103.95 (10)N2—C2—H2124.1
O1—C1—N1129.42 (12)N4—C2—H2124.1
O1—C1—N4127.80 (12)N1—C3—C4113.40 (11)
N1—C1—N4102.77 (10)N1—C3—H3A108.9
C6—C5—C4120.48 (12)C4—C3—H3A108.9
C6—C5—H5119.8N1—C3—H3B108.9
C4—C5—H5119.8C4—C3—H3B108.9
C9—C4—C5119.16 (13)H3A—C3—H3B107.7
C9—C4—C3120.48 (12)C7—C8—C9120.47 (13)
C5—C4—C3120.35 (12)C7—C8—H8119.8
C7—C6—C5120.20 (13)C9—C8—H8119.8
C1—N1—N2—C2−0.71 (14)C5—C6—C7—C8−0.7 (2)
C3—N1—N2—C2−177.58 (11)C5—C4—C9—C8−0.3 (2)
N2—N1—C1—O1−178.86 (12)C3—C4—C9—C8178.48 (13)
C3—N1—C1—O1−2.2 (2)N1—N2—C2—N40.32 (14)
N2—N1—C1—N40.78 (13)C1—N4—C2—N20.15 (15)
C3—N1—C1—N4177.44 (11)N3—N4—C2—N2−175.76 (12)
C2—N4—C1—O1179.10 (12)C1—N1—C3—C4−97.82 (15)
N3—N4—C1—O1−5.1 (2)N2—N1—C3—C478.60 (15)
C2—N4—C1—N1−0.55 (13)C9—C4—C3—N1114.42 (14)
N3—N4—C1—N1175.21 (11)C5—C4—C3—N1−66.81 (16)
C6—C5—C4—C9−0.6 (2)C6—C7—C8—C9−0.2 (2)
C6—C5—C4—C3−179.35 (12)C4—C9—C8—C70.7 (2)
C4—C5—C6—C71.1 (2)
D—H···AD—HH···AD···AD—H···A
N3—H32···O1i0.90 (1)2.47 (2)3.0583 (15)124 (1)
N3—H31···O1ii0.90 (1)2.22 (2)3.0701 (16)156 (2)
C2—H2···O1iii0.952.243.181 (2)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H32⋯O1i 0.90 (1)2.47 (2)3.0583 (15)124 (1)
N3—H31⋯O1ii 0.90 (1)2.22 (2)3.0701 (16)156 (2)
C2—H2⋯O1iii 0.952.243.181 (2)168

Symmetry codes: (i) ; (ii) ; (iii) .

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