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Literature DB >> 25483933

The genetic code. Rewritten, revised, repurposed.

Abstract

Despite remaining apparently frozen through the millennia, the genetic code is far more flexible than previously believed and can be extended and repurposed with relative ease.

Keywords: nonstandard amino acids (NSAAs); recoding; synthetic DNA; unnatural base pairs (UBPs)

Mesh：

Substances：
Codon

Year: 2014 PMID： 25483933 PMCID： PMC4201596 DOI： 10.4161/adna.29408

Source DB: PubMed Journal: Artif DNA PNA XNA ISSN： 1949-095X

24 in total

1. 'Big data', Hadoop and cloud computing in genomics.

Authors: Aisling O'Driscoll; Jurate Daugelaite; Roy D Sleator
Journal: J Biomed Inform Date: 2013-07-18 Impact factor: 6.317

2. Stop codon reassignments in the wild.

Authors: Natalia N Ivanova; Patrick Schwientek; H James Tripp; Christian Rinke; Amrita Pati; Marcel Huntemann; Axel Visel; Tanja Woyke; Nikos C Kyrpides; Edward M Rubin
Journal: Science Date: 2014-05-23 Impact factor: 47.728

3. Codon optimisation to improve expression of a Mycobacterium avium ssp. paratuberculosis-specific membrane-associated antigen by Lactobacillus salivarius.

Authors: Christopher Johnston; Pierre E Douarre; Tewfik Soulimane; Daniel Pletzer; Helge Weingart; John MacSharry; Aidan Coffey; Roy D Sleator; Jim O'Mahony
Journal: Pathog Dis Date: 2013-04-18 Impact factor: 3.166

4. Total synthesis of a functional designer eukaryotic chromosome.

Authors: Narayana Annaluru; Héloïse Muller; Leslie A Mitchell; Sivaprakash Ramalingam; Giovanni Stracquadanio; Sarah M Richardson; Jessica S Dymond; Zheng Kuang; Lisa Z Scheifele; Eric M Cooper; Yizhi Cai; Karen Zeller; Neta Agmon; Jeffrey S Han; Michalis Hadjithomas; Jennifer Tullman; Katrina Caravelli; Kimberly Cirelli; Zheyuan Guo; Viktoriya London; Apurva Yeluru; Sindurathy Murugan; Karthikeyan Kandavelou; Nicolas Agier; Gilles Fischer; Kun Yang; J Andrew Martin; Murat Bilgel; Pavlo Bohutski; Kristin M Boulier; Brian J Capaldo; Joy Chang; Kristie Charoen; Woo Jin Choi; Peter Deng; James E DiCarlo; Judy Doong; Jessilyn Dunn; Jason I Feinberg; Christopher Fernandez; Charlotte E Floria; David Gladowski; Pasha Hadidi; Isabel Ishizuka; Javaneh Jabbari; Calvin Y L Lau; Pablo A Lee; Sean Li; Denise Lin; Matthias E Linder; Jonathan Ling; Jaime Liu; Jonathan Liu; Mariya London; Henry Ma; Jessica Mao; Jessica E McDade; Alexandra McMillan; Aaron M Moore; Won Chan Oh; Yu Ouyang; Ruchi Patel; Marina Paul; Laura C Paulsen; Judy Qiu; Alex Rhee; Matthew G Rubashkin; Ina Y Soh; Nathaniel E Sotuyo; Venkatesh Srinivas; Allison Suarez; Andy Wong; Remus Wong; Wei Rose Xie; Yijie Xu; Allen T Yu; Romain Koszul; Joel S Bader; Jef D Boeke; Srinivasan Chandrasegaran
Journal: Science Date: 2014-03-27 Impact factor: 47.728

5. Towards practical, high-capacity, low-maintenance information storage in synthesized DNA.

Authors: Nick Goldman; Paul Bertone; Siyuan Chen; Christophe Dessimoz; Emily M LeProust; Botond Sipos; Ewan Birney
Journal: Nature Date: 2013-01-23 Impact factor: 49.962

6. Digitizing humanity.

Authors: Roy D Sleator; Aisling O'Driscoll
Journal: Artif DNA PNA XNA Date: 2013 Apr-Jun

7. Genomically recoded organisms expand biological functions.

Authors: Marc J Lajoie; Alexis J Rovner; Daniel B Goodman; Hans-Rudolf Aerni; Adrian D Haimovich; Gleb Kuznetsov; Jaron A Mercer; Harris H Wang; Peter A Carr; Joshua A Mosberg; Nadin Rohland; Peter G Schultz; Joseph M Jacobson; Jesse Rinehart; George M Church; Farren J Isaacs
Journal: Science Date: 2013-10-18 Impact factor: 47.728

The genetic code. Rewritten, revised, repurposed.

1. 'Big data', Hadoop and cloud computing in genomics.

2. Stop codon reassignments in the wild.

3. Codon optimisation to improve expression of a Mycobacterium avium ssp. paratuberculosis-specific membrane-associated antigen by Lactobacillus salivarius.

4. Total synthesis of a functional designer eukaryotic chromosome.

5. Towards practical, high-capacity, low-maintenance information storage in synthesized DNA.

6. Digitizing humanity.

7. Genomically recoded organisms expand biological functions.

8. Carbon source-dependent expansion of the genetic code in bacteria.

9. The synthetic biology future.

10. A semi-synthetic organism with an expanded genetic alphabet.

Review 1. Under the microscope: From pathogens to probiotics and back.

2. TRAPPIST-1: The dawning of the age of Aquarius.

3. JCVI-syn3.0 - A synthetic genome stripped bare!