Literature DB >> 25483033

Small RNAs meet their targets: when methylation defends miRNAs from uridylation.

Guodong Ren1, Xuemei Chen, Bin Yu.   

Abstract

Small RNAs are incorporated into Argonaute protein-containing complexes to guide the silencing of target RNAs in both animals and plants. The abundance of endogenous small RNAs is precisely controlled at multiple levels including transcription, processing and Argonaute loading. In addition to these processes, 3' end modification of small RNAs, the topic of a research area that has rapidly evolved over the last several years, adds another layer of regulation of their abundance, diversity and function. Here, we review our recent understanding of small RNA 3' end methylation and tailing.

Keywords:  argonaute; methylation; small RNA; uridylation

Mesh:

Substances:

Year:  2014        PMID: 25483033      PMCID: PMC4615765          DOI: 10.4161/rna.36243

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  52 in total

Review 1.  Biogenesis of small RNAs in animals.

Authors:  V Narry Kim; Jinju Han; Mikiko C Siomi
Journal:  Nat Rev Mol Cell Biol       Date:  2009-02       Impact factor: 94.444

Review 2.  Argonaute proteins: functional insights and emerging roles.

Authors:  Gunter Meister
Journal:  Nat Rev Genet       Date:  2013-06-04       Impact factor: 53.242

Review 3.  Classification and comparison of small RNAs from plants.

Authors:  Michael J Axtell
Journal:  Annu Rev Plant Biol       Date:  2013-01-16       Impact factor: 26.379

4.  Mono-uridylation of pre-microRNA as a key step in the biogenesis of group II let-7 microRNAs.

Authors:  Inha Heo; Minju Ha; Jaechul Lim; Mi-Jeong Yoon; Jong-Eun Park; S Chul Kwon; Hyeshik Chang; V Narry Kim
Journal:  Cell       Date:  2012-10-11       Impact factor: 41.582

5.  The exoribonuclease Dis3L2 defines a novel eukaryotic RNA degradation pathway.

Authors:  Michal Malecki; Sandra C Viegas; Tiago Carneiro; Pawel Golik; Clémentine Dressaire; Miguel G Ferreira; Cecília M Arraiano
Journal:  EMBO J       Date:  2013-03-15       Impact factor: 11.598

6.  Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2.

Authors:  Takayuki Katoh; Yuriko Sakaguchi; Kenjyo Miyauchi; Takeo Suzuki; Shin-Ichi Kashiwabara; Tadashi Baba; Tsutomu Suzuki
Journal:  Genes Dev       Date:  2009-02-15       Impact factor: 11.361

Review 7.  MicroRNAs: target recognition and regulatory functions.

Authors:  David P Bartel
Journal:  Cell       Date:  2009-01-23       Impact factor: 41.582

8.  The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC.

Authors:  Michael D Horwich; Chengjian Li; Christian Matranga; Vasily Vagin; Gwen Farley; Peng Wang; Phillip D Zamore
Journal:  Curr Biol       Date:  2007-06-28       Impact factor: 10.834

9.  Differential impact of the HEN1 homolog HENN-1 on 21U and 26G RNAs in the germline of Caenorhabditis elegans.

Authors:  Leonie M Kamminga; Josien C van Wolfswinkel; Maartje J Luteijn; Lucas J T Kaaij; Marloes P Bagijn; Alexandra Sapetschnig; Eric A Miska; Eugene Berezikov; René F Ketting
Journal:  PLoS Genet       Date:  2012-07-19       Impact factor: 5.917

10.  A role for the Perlman syndrome exonuclease Dis3l2 in the Lin28-let-7 pathway.

Authors:  Hao-Ming Chang; Robinson Triboulet; James E Thornton; Richard I Gregory
Journal:  Nature       Date:  2013-04-17       Impact factor: 49.962

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  11 in total

Review 1.  Plant miRNAs: biogenesis, organization and origins.

Authors:  Hikmet Budak; B Ani Akpinar
Journal:  Funct Integr Genomics       Date:  2015-06-26       Impact factor: 3.410

2.  Degradation of unmethylated miRNA/miRNA*s by a DEDDy-type 3' to 5' exoribonuclease Atrimmer 2 in Arabidopsis.

Authors:  Xiaoyan Wang; Yuan Wang; Yongchao Dou; Lu Chen; Junli Wang; Ning Jiang; Chunce Guo; Qingqing Yao; Chizao Wang; Lin Liu; Bin Yu; Binglian Zheng; Julia A Chekanova; Jinbiao Ma; Guodong Ren
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-25       Impact factor: 11.205

3.  MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.

Authors:  Shengjun Li; Kan Liu; Bangjun Zhou; Mu Li; Shuxin Zhang; Lirong Zeng; Chi Zhang; Bin Yu
Journal:  Plant Cell       Date:  2018-02-05       Impact factor: 11.277

4.  Widespread 3'-end uridylation in eukaryotic RNA viruses.

Authors:  Yayun Huo; Jianguo Shen; Huanian Wu; Chao Zhang; Lihua Guo; Jinguang Yang; Weimin Li
Journal:  Sci Rep       Date:  2016-05-06       Impact factor: 4.379

5.  Differential hepatitis C virus RNA target site selection and host factor activities of naturally occurring miR-122 3΄ variants.

Authors:  Daisuke Yamane; Sara R Selitsky; Tetsuro Shimakami; You Li; Mi Zhou; Masao Honda; Praveen Sethupathy; Stanley M Lemon
Journal:  Nucleic Acids Res       Date:  2017-05-05       Impact factor: 16.971

Review 6.  PIWI-interacting RNAs: Mitochondria-based biogenesis and functions in cancer.

Authors:  Jing-Fen Su; Anthony Concilla; Dian-Zheng Zhang; Fang Zhao; Fang-Fang Shen; Hao Zhang; Fu-You Zhou
Journal:  Genes Dis       Date:  2020-10-05

Review 7.  Discoveries and advances in plant and animal genomics.

Authors:  Rudi Appels; Johan Nystrom; Hollie Webster; Gabriel Keeble-Gagnere
Journal:  Funct Integr Genomics       Date:  2015-03-13       Impact factor: 3.410

8.  Identification and characterization of novel and conserved microRNAs in several tissues of the Chinese rare minnow (Gobiocypris rarus) based on illumina deep sequencing technology.

Authors:  Xiangsheng Hong; Jianhui Qin; Rui Chen; Lilai Yuan; Jinmiao Zha; Zijian Wang
Journal:  BMC Genomics       Date:  2016-04-12       Impact factor: 3.969

Review 9.  Abiotic stress miRNomes in the Triticeae.

Authors:  Burcu Alptekin; Peter Langridge; Hikmet Budak
Journal:  Funct Integr Genomics       Date:  2016-09-24       Impact factor: 3.410

10.  3'-Terminal 2'-O-methylation of lung cancer miR-21-5p enhances its stability and association with Argonaute 2.

Authors:  Hongwei Liang; Zichen Jiao; Weiwei Rong; Shuang Qu; Zhicong Liao; Xinlei Sun; Yao Wei; Quan Zhao; Jun Wang; Yuan Liu; Xi Chen; Tao Wang; Chen-Yu Zhang; Ke Zen
Journal:  Nucleic Acids Res       Date:  2020-07-27       Impact factor: 16.971

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