Literature DB >> 25482541

Electrostatic interactions between the Bni1p Formin FH2 domain and actin influence actin filament nucleation.

Joseph L Baker1, Naomi Courtemanche2, Daniel L Parton3, Martin McCullagh1, Thomas D Pollard4, Gregory A Voth5.   

Abstract

Formins catalyze nucleation and growth of actin filaments. Here, we study the structure and interactions of actin with the FH2 domain of budding yeast formin Bni1p. We built an all-atom model of the formin dimer on an Oda actin filament 7-mer and studied structural relaxation and interprotein interactions by molecular dynamics simulations. These simulations produced a refined model for the FH2 dimer associated with the barbed end of the filament and showed electrostatic interactions between the formin knob and actin target-binding cleft. Mutations of two formin residues contributing to these interactions (R1423N, K1467L, or both) reduced the interaction energies between the proteins, and in coarse-grained simulations, the formin lost more interprotein contacts with an actin dimer than with an actin 7-mer. Biochemical experiments confirmed a strong influence of these mutations on Bni1p-mediated actin filament nucleation, but not elongation, suggesting that different interactions contribute to these two functions of formins.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25482541      PMCID: PMC4286494          DOI: 10.1016/j.str.2014.10.014

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  36 in total

1.  Formin leaky cap allows elongation in the presence of tight capping proteins.

Authors:  Sally H Zigmond; Marie Evangelista; Charles Boone; Changsong Yang; Arvin C Dar; Frank Sicheri; Joe Forkey; Martin Pring
Journal:  Curr Biol       Date:  2003-10-14       Impact factor: 10.834

2.  Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations.

Authors:  Alexander D Mackerell; Michael Feig; Charles L Brooks
Journal:  J Comput Chem       Date:  2004-08       Impact factor: 3.376

3.  Actin polymerization-driven molecular movement of mDia1 in living cells.

Authors:  Chiharu Higashida; Takushi Miyoshi; Akiko Fujita; Fabian Oceguera-Yanez; James Monypenny; Yoshikazu Andou; Shuh Narumiya; Naoki Watanabe
Journal:  Science       Date:  2004-03-26       Impact factor: 47.728

4.  Crystal structures of a Formin Homology-2 domain reveal a tethered dimer architecture.

Authors:  Yingwu Xu; James B Moseley; Isabelle Sagot; Florence Poy; David Pellman; Bruce L Goode; Michael J Eck
Journal:  Cell       Date:  2004-03-05       Impact factor: 41.582

5.  Determinants of Formin Homology 1 (FH1) domain function in actin filament elongation by formins.

Authors:  Naomi Courtemanche; Thomas D Pollard
Journal:  J Biol Chem       Date:  2012-01-14       Impact factor: 5.157

6.  Actin-binding proteins--a unifying hypothesis.

Authors:  Roberto Dominguez
Journal:  Trends Biochem Sci       Date:  2004-11       Impact factor: 13.807

7.  Identification of cation-binding sites on actin that drive polymerization and modulate bending stiffness.

Authors:  Hyeran Kang; Michael J Bradley; Brannon R McCullough; Anaëlle Pierre; Elena E Grintsevich; Emil Reisler; Enrique M De La Cruz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-01       Impact factor: 11.205

Review 8.  Regulation of actin by ion-linked equilibria.

Authors:  Hyeran Kang; Michael J Bradley; W Austin Elam; Enrique M De La Cruz
Journal:  Biophys J       Date:  2013-12-17       Impact factor: 4.033

9.  Insertional assembly of actin filament barbed ends in association with formins produces piconewton forces.

Authors:  David R Kovar; Thomas D Pollard
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-17       Impact factor: 11.205

10.  The fission yeast cytokinesis formin Cdc12p is a barbed end actin filament capping protein gated by profilin.

Authors:  David R Kovar; Jeffrey R Kuhn; Andrea L Tichy; Thomas D Pollard
Journal:  J Cell Biol       Date:  2003-06-09       Impact factor: 10.539

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  9 in total

Review 1.  Actin and Actin-Binding Proteins.

Authors:  Thomas D Pollard
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-08-01       Impact factor: 10.005

Review 2.  Biochemical and mechanical regulation of actin dynamics.

Authors:  Pekka Lappalainen; Tommi Kotila; Antoine Jégou; Guillaume Romet-Lemonne
Journal:  Nat Rev Mol Cell Biol       Date:  2022-08-02       Impact factor: 113.915

3.  Computational modeling highlights the role of the disordered Formin Homology 1 domain in profilin-actin transfer.

Authors:  Brandon G Horan; Gül H Zerze; Young C Kim; Dimitrios Vavylonis; Jeetain Mittal
Journal:  FEBS Lett       Date:  2018-05-24       Impact factor: 4.124

4.  Role of the C-terminal Extension of Formin 2 in Its Activation by Spire Protein and Processive Assembly of Actin Filaments.

Authors:  Pierre Montaville; Sonja Kühn; Christel Compper; Marie-France Carlier
Journal:  J Biol Chem       Date:  2015-12-14       Impact factor: 5.157

5.  Modulation of formin processivity by profilin and mechanical tension.

Authors:  Luyan Cao; Mikael Kerleau; Emiko L Suzuki; Hugo Wioland; Sandy Jouet; Berengere Guichard; Martin Lenz; Guillaume Romet-Lemonne; Antoine Jegou
Journal:  Elife       Date:  2018-05-25       Impact factor: 8.140

6.  The neuron-specific formin Delphilin nucleates nonmuscle actin but does not enhance elongation.

Authors:  William T Silkworth; Kristina L Kunes; Grace C Nickel; Martin L Phillips; Margot E Quinlan; Christina L Vizcarra
Journal:  Mol Biol Cell       Date:  2017-12-27       Impact factor: 4.138

7.  Formin and capping protein together embrace the actin filament in a ménage à trois.

Authors:  Shashank Shekhar; Mikael Kerleau; Sonja Kühn; Julien Pernier; Guillaume Romet-Lemonne; Antoine Jégou; Marie-France Carlier
Journal:  Nat Commun       Date:  2015-11-13       Impact factor: 14.919

8.  Gating mechanisms during actin filament elongation by formins.

Authors:  Fikret Aydin; Naomi Courtemanche; Thomas D Pollard; Gregory A Voth
Journal:  Elife       Date:  2018-07-23       Impact factor: 8.140

Review 9.  Towards a structural understanding of the remodeling of the actin cytoskeleton.

Authors:  Felipe Merino; Sabrina Pospich; Stefan Raunser
Journal:  Semin Cell Dev Biol       Date:  2019-12-10       Impact factor: 7.727

  9 in total

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