Literature DB >> 25478623

The effect of local bending on gating of MscL using a representative volume element and finite element simulation.

Omid Bavi, Manouchehr Vossoughi, Reza Naghdabadi, Yousef Jamali.   

Abstract

Many physiological processes such as cell division, endocytosis and exocytosis cause severe local curvature of the cell membrane. Local curvature has been shown experimentally to modulate numerous mechanosensitive (MS) ion channels. In order to quantify the effects of local curvature we introduced a coarse grain representative volume element for the bacterial mechanosensitive ion channel of large conductance (MscL) using continuum elasticity. Our model is designed to be consistent with the channel conformation in the closed and open states to capture its major continuum rheological behavior in response to the local membrane curvature. Herein we show that change in the local curvature of the lipid bilayer can modulate MscL activity considerably by changing both bilayer thickness and lateral pressure profile. Intriguingly, although bending in any direction results in almost the same free-energy cost, inward (cytoplasmic) bending favors channel opening, whereas outward (periplasmic) bending facilitates closing of the narrowest part of the MscL pore. This quantitative study using MscL as a model channel may have wide reaching consequences for the effect of local curvature on the physiological function of other types of prokaryotic and eukaryotic membrane proteins.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 25478623      PMCID: PMC4203736          DOI: 10.4161/chan.29572

Source DB:  PubMed          Journal:  Channels (Austin)        ISSN: 1933-6950            Impact factor:   2.581


  34 in total

1.  The gating mechanism of the large mechanosensitive channel MscL.

Authors:  S Sukharev; M Betanzos; C S Chiang; H R Guy
Journal:  Nature       Date:  2001-02-08       Impact factor: 49.962

2.  Open channel structure of MscL and the gating mechanism of mechanosensitive channels.

Authors:  Eduardo Perozo; D Marien Cortes; Pornthep Sompornpisut; Anna Kloda; Boris Martinac
Journal:  Nature       Date:  2002-08-29       Impact factor: 49.962

Review 3.  Bacterial mechanosensitive channels as a paradigm for mechanosensory transduction.

Authors:  Boris Martinac
Journal:  Cell Physiol Biochem       Date:  2011-12-16

Review 4.  Sensing pressure with ion channels.

Authors:  Bernd Nilius; Eric Honoré
Journal:  Trends Neurosci       Date:  2012-05-22       Impact factor: 13.837

5.  Conformational changes involved in MscL channel gating measured using FRET spectroscopy.

Authors:  Ben Corry; Paul Rigby; Zhen-Wei Liu; Boris Martinac
Journal:  Biophys J       Date:  2005-09-30       Impact factor: 4.033

6.  HOLE: a program for the analysis of the pore dimensions of ion channel structural models.

Authors:  O S Smart; J G Neduvelil; X Wang; B A Wallace; M S Sansom
Journal:  J Mol Graph       Date:  1996-12

Review 7.  EPR approaches to ion channel structure and function.

Authors:  E Perozo; L G Cuello; D M Cortes; Y S Liu; P Sompornpisut
Journal:  Novartis Found Symp       Date:  2002

8.  Hydrophobic coupling of lipid bilayer energetics to channel function.

Authors:  Robyn L Goforth; Aung K Chi; Denise V Greathouse; Lyndon L Providence; Roger E Koeppe; Olaf S Andersen
Journal:  J Gen Physiol       Date:  2003-05       Impact factor: 4.086

9.  Physical principles underlying the transduction of bilayer deformation forces during mechanosensitive channel gating.

Authors:  Eduardo Perozo; Anna Kloda; D Marien Cortes; Boris Martinac
Journal:  Nat Struct Biol       Date:  2002-09

10.  Gating mechanisms of mechanosensitive channels of large conductance, I: a continuum mechanics-based hierarchical framework.

Authors:  Xi Chen; Qiang Cui; Yuye Tang; Jejoong Yoo; Arun Yethiraj
Journal:  Biophys J       Date:  2008-04-04       Impact factor: 4.033

View more
  8 in total

1.  Nanomechanical properties of MscL α helices: A steered molecular dynamics study.

Authors:  N Bavi; O Bavi; M Vossoughi; R Naghdabadi; A P Hill; B Martinac; Y Jamali
Journal:  Channels (Austin)       Date:  2016-10-18       Impact factor: 2.581

2.  Modulation of DEG/ENaCs by Amphiphiles Suggests Sensitivity to Membrane Alterations.

Authors:  Axel Schmidt; Rick J Alsop; Rahul Rimal; Pia Lenzig; Sylvia Joussen; Natalie N Gervasi; Adree Khondker; Stefan Gründer; Maikel C Rheinstädter; Dominik Wiemuth
Journal:  Biophys J       Date:  2018-03-27       Impact factor: 4.033

3.  Elucidating the molecular basis of spontaneous activation in an engineered mechanosensitive channel.

Authors:  Kalyan Immadisetty; Adithya Polasa; Reid Shelton; Mahmoud Moradi
Journal:  Comput Struct Biotechnol J       Date:  2022-05-23       Impact factor: 6.155

Review 4.  Biogenesis, transport and remodeling of lysophospholipids in Gram-negative bacteria.

Authors:  Lei Zheng; Yibin Lin; Shuo Lu; Jiazhe Zhang; Mikhail Bogdanov
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2016-12-09       Impact factor: 4.698

5.  Influence of Global and Local Membrane Curvature on Mechanosensitive Ion Channels: A Finite Element Approach.

Authors:  Omid Bavi; Charles D Cox; Manouchehr Vossoughi; Reza Naghdabadi; Yousef Jamali; Boris Martinac
Journal:  Membranes (Basel)       Date:  2016-02-05

6.  Quantitative Characterization of the Affected Zones in a Single Crystal Fe-6Si Steel Sheet by Fine Piercing.

Authors:  Tatsuhiko Aizawa; Tomomi Shiratori; Tomoaki Yoshino; Yohei Suzuki; Kuniaki Dohda
Journal:  Micromachines (Basel)       Date:  2022-03-31       Impact factor: 2.891

7.  The Combined Effect of Hydrophobic Mismatch and Bilayer Local Bending on the Regulation of Mechanosensitive Ion Channels.

Authors:  Omid Bavi; Manouchehr Vossoughi; Reza Naghdabadi; Yousef Jamali
Journal:  PLoS One       Date:  2016-03-09       Impact factor: 3.240

8.  Pulling MscL open via N-terminal and TM1 helices: A computational study towards engineering an MscL nanovalve.

Authors:  Adam D Martinac; Navid Bavi; Omid Bavi; Boris Martinac
Journal:  PLoS One       Date:  2017-08-31       Impact factor: 3.240

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.