| Literature DB >> 25477749 |
Tomasz Kolenda1, Weronika Przybyła2, Anna Teresiak2, Andrzej Mackiewicz3, Katarzyna M Lamperska2.
Abstract
miRNAs belong to a class of small non-coding RNAs which can modulate gene expression. Disturbances in their expression and function may cause cancer formation, progression and cell response to various types of stress. The let-7 family is one of the most studied groups of miRNAs. The family contains 13 members with similar sequences and a wide spectrum of target genes. In this paper, we mostly focus on one member of the family - let-7d. This miRNA is dysregulated in many types of cancers. It can be over- or down-expressed, and it acts as a tumor suppressor or oncogene. It regulates various genes such as LIN28, C-MYC, K-RAS, HMGA2 and IMP-1. Moreover, let-7d has a significant impact on epithelial-to-mesenchymal transition (EMT) and formation of cancer initiating cells which are resistant to irradiation and chemical exposure and responsible for cancer metastasis. Let-7d can serve as a prognostic and predictive marker for personalization of the treatment. Let-7d is a small RNA with great power, but in different cell genetic backgrounds it acts in different ways, which makes this molecule still mysterious.Entities:
Keywords: cancer; chemotherapy; gene regulation; let-7 family; let-7d; miRNA; radiotherapy
Year: 2014 PMID: 25477749 PMCID: PMC4248056 DOI: 10.5114/wo.2014.44467
Source DB: PubMed Journal: Contemp Oncol (Pozn) ISSN: 1428-2526
Fig. 1Characterization of let-7 family: A) genomic localization of its members; arrows show exact localization of miRNA within chromosome; B) sequence similarity and C) structure of let-7a-1/let-7f-1/let-7d cluster. Data obtained from GenBank (NCBI) and miRBase databases
Predicted target genes for: A) let-7d-5p and B) for let-7d-3p (let-7d*). Let-7d-5p has over 300 and let-7d-3p has 40 predicted target genes. Some of them have been experimentally validated. Data obtained from miRDB and TarBase databases. Target scores equal to and over 0.8 (for A) and 0.7 (for B) have been choosen as criteria for let-7d targets; *target score taken from TarBase
| A | |||
|---|---|---|---|
| Target score | Validated by | Gene symbol | Gene description |
| 0.96/0.99* | sequencing | LIN28B | lin-28 homolog B (C. elegans) |
| 0.971* | sequencing | ZNF280B | zinc finger protein 280B |
| 0.969* | sequencing | SLC20A1 | solute carrier family 20 (phosphate transporter), member 1 |
| 0.965* | sequencing | TMEM135 | transmembrane protein 135 |
| 0.955* | sequencing | IGF1R | insulin-like growth factor 1 receptor |
| 0.951* | sequencing | KPNA5 | karyopherin alpha 5 (importin alpha 6) |
| 0.939* | sequencing | HAND1 | heart and neural crest derivates expressed 1 |
| 0.939* | sequencing | TGFBR1 | transforming growth factor, beta receptor 1 |
| 0.931* | sequencing | SMARCAD1 | SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 |
| 0.922* | sequencing | USP24 | ubiquitin specific peptidase 24 |
| 0.920 | LRIG3 | leucine-rich repeats and immunoglobulin-like domains 3 | |
| 0.920 | DDI2 | DNA-damage inducible 1 homolog 2 (S. cerevisiae) | |
| 0.911* | sequencing | ONECUT2 | one cut homebox 2 |
| 0.896* | sequencing | SLC10A7 | solute carrier family 10, member 7 |
| 0.89/1.00* | sequencing | IGF2BP1 | insulin-like growth factor 2 mRNA binding protein 1 |
| 0.880* | sequencing | ARID3A | AT rich interactive domain 3A |
| 0.880 | PRTG | protogenin | |
| 0.872* | sequencing | SPRYD4 | SPRY domain containing 4 |
| 0.870 | expression observation | HMGA2 | high mobility group AT-book 2 |
| 0.869* | sequencing | FAM104A | family with sequence similiarity 104, member A |
| 0.850 | NAP1L1 | nucleosome assembly protein 1-like 1 | |
| 0.850 | USP38 | ubiquitin specific peptidase 38 | |
| 0.850 | COIL | coilin | |
| 0.847* | sequencing | C11orf57 | chromosome 11 open reading frame 57 |
| 0.842* | sequencing | ZNF644 | zinc finger protein 644 |
| 0.840 | LIMD2 | LIM domain containing 2 | |
| 0.840 | ADRB2 | adrenergic, beta-2 receptor, surface | |
| 0.830 | DCLRE1B | DNA cross-link repair 1B | |
| 0.830 | GATM | glycine amidinotransferase (L-arginine: glycine amidinotranserase) | |
| 0.830 | FIGNL2 | fidgetin-like 2 | |
| 0.830* | IGDCC4 | immunoglobulin superfamily, DCC subclass, member 4 | |
| 0.822* | GLMN | glomulin, FKBP associated protein | |
| 0.820 | COL14A1 | collagen, type XIV, alpha 1 | |
| 0.820 | DMD | dystrophin | |
| 0.815* | sequencing | NHLRC3 | NHL repeat containing 3 |
| 0.810 | SLC5A9 | solute carrier family 5 (sodium/glucose cotransporter), member 9 | |
| 0.800 | GDF6 | growth differentiation factor 6 | |
| 0.800 | MAP4K3 | mitogen-activated protein kinase 3 | |
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| 0.840 | MEX3C | mex-3 homolog C (C. elegans) | |
| 0.810 | NOM1 | nucleolar protein with MIF4G domain 1 | |
| 0.760 | SH3RF1 | SH3 domain containing ring finger 1 | |
| 0.730 | PTAR1 | protein prenyltransferase alpha subunit repeat containing 1 | |
| 0.730 | KIAA1267 | KIAA1267 | |
| 0.710 | PARP11 | poly (ADP-ribose) polymerase family, member 11 |