Literature DB >> 25477475

Using hierarchical cluster models to systematically identify groups of jobs with similar occupational questionnaire response patterns to assist rule-based expert exposure assessment in population-based studies.

Melissa C Friesen1, Susan M Shortreed2, David C Wheeler3, Igor Burstyn4, Roel Vermeulen5, Anjoeka Pronk6, Joanne S Colt7, Dalsu Baris7, Margaret R Karagas8, Molly Schwenn9, Alison Johnson10, Karla R Armenti11, Debra T Silverman7, Kai Yu12.   

Abstract

OBJECTIVES: Rule-based expert exposure assessment based on questionnaire response patterns in population-based studies improves the transparency of the decisions. The number of unique response patterns, however, can be nearly equal to the number of jobs. An expert may reduce the number of patterns that need assessment using expert opinion, but each expert may identify different patterns of responses that identify an exposure scenario. Here, hierarchical clustering methods are proposed as a systematic data reduction step to reproducibly identify similar questionnaire response patterns prior to obtaining expert estimates. As a proof-of-concept, we used hierarchical clustering methods to identify groups of jobs (clusters) with similar responses to diesel exhaust-related questions and then evaluated whether the jobs within a cluster had similar (previously assessed) estimates of occupational diesel exhaust exposure.
METHODS: Using the New England Bladder Cancer Study as a case study, we applied hierarchical cluster models to the diesel-related variables extracted from the occupational history and job- and industry-specific questionnaires (modules). Cluster models were separately developed for two subsets: (i) 5395 jobs with ≥1 variable extracted from the occupational history indicating a potential diesel exposure scenario, but without a module with diesel-related questions; and (ii) 5929 jobs with both occupational history and module responses to diesel-relevant questions. For each subset, we varied the numbers of clusters extracted from the cluster tree developed for each model from 100 to 1000 groups of jobs. Using previously made estimates of the probability (ordinal), intensity (µg m(-3) respirable elemental carbon), and frequency (hours per week) of occupational exposure to diesel exhaust, we examined the similarity of the exposure estimates for jobs within the same cluster in two ways. First, the clusters' homogeneity (defined as >75% with the same estimate) was examined compared to a dichotomized probability estimate (<5 versus ≥5%; <50 versus ≥50%). Second, for the ordinal probability metric and continuous intensity and frequency metrics, we calculated the intraclass correlation coefficients (ICCs) between each job's estimate and the mean estimate for all jobs within the cluster.
RESULTS: Within-cluster homogeneity increased when more clusters were used. For example, ≥80% of the clusters were homogeneous when 500 clusters were used. Similarly, ICCs were generally above 0.7 when ≥200 clusters were used, indicating minimal within-cluster variability. The most within-cluster variability was observed for the frequency metric (ICCs from 0.4 to 0.8). We estimated that using an expert to assign exposure at the cluster-level assignment and then to review each job in non-homogeneous clusters would require ~2000 decisions per expert, in contrast to evaluating 4255 unique questionnaire patterns or 14983 individual jobs.
CONCLUSIONS: This proof-of-concept shows that using cluster models as a data reduction step to identify jobs with similar response patterns prior to obtaining expert ratings has the potential to aid rule-based assessment by systematically reducing the number of exposure decisions needed. While promising, additional research is needed to quantify the actual reduction in exposure decisions and the resulting homogeneity of exposure estimates within clusters for an exposure assessment effort that obtains cluster-level expert assessments as part of the assessment process. Published by Oxford University Press on behalf of the British Occupational Hygiene Society 2014.

Entities:  

Keywords:  case–control studies; diesel exhaust; hierarchical clusters; occupational exposures

Mesh:

Substances:

Year:  2014        PMID: 25477475      PMCID: PMC4385262          DOI: 10.1093/annhyg/meu101

Source DB:  PubMed          Journal:  Ann Occup Hyg        ISSN: 0003-4878


  14 in total

1.  Sharing the knowledge gained from occupational cohort studies: a call for action.

Authors:  Thomas Behrens; Birte Mester; Lin Fritschi
Journal:  Occup Environ Med       Date:  2012-01-02       Impact factor: 4.402

2.  Occupation and bladder cancer in a population-based case-control study in Northern New England.

Authors:  Joanne S Colt; Margaret R Karagas; Molly Schwenn; Dalsu Baris; Alison Johnson; Patricia Stewart; Castine Verrill; Lee E Moore; Jay Lubin; Mary H Ward; Claudine Samanic; Nathaniel Rothman; Kenneth P Cantor; Laura E Beane Freeman; Alan Schned; Sai Cherala; Debra T Silverman
Journal:  Occup Environ Med       Date:  2010-09-23       Impact factor: 4.402

3.  Developing estimates of frequency and intensity of exposure to three types of metalworking fluids in a population-based case-control study of bladder cancer.

Authors:  Melissa C Friesen; Dong-Uk Park; Joanne S Colt; Dalsu Baris; Molly Schwenn; Margaret R Karagas; Karla R Armenti; Alison Johnson; Debra T Silverman; Patricia A Stewart
Journal:  Am J Ind Med       Date:  2014-08       Impact factor: 2.214

4.  Comparison of algorithm-based estimates of occupational diesel exhaust exposure to those of multiple independent raters in a population-based case-control study.

Authors:  Melissa C Friesen; Anjoeka Pronk; David C Wheeler; Yu-Cheng Chen; Sarah J Locke; Dennis D Zaebst; Molly Schwenn; Alison Johnson; Richard Waddell; Dalsu Baris; Joanne S Colt; Debra T Silverman; Patricia A Stewart; Hormuzd A Katki
Journal:  Ann Occup Hyg       Date:  2012-11-25

5.  Identification and prospective validation of clinically relevant chronic obstructive pulmonary disease (COPD) subtypes.

Authors:  Judith Garcia-Aymerich; Federico P Gómez; Marta Benet; Eva Farrero; Xavier Basagaña; Àngel Gayete; Carles Paré; Xavier Freixa; Jaume Ferrer; Antoni Ferrer; Josep Roca; Juan B Gáldiz; Jaume Sauleda; Eduard Monsó; Joaquim Gea; Joan A Barberà; Àlvar Agustí; Josep M Antó
Journal:  Thorax       Date:  2010-12-21       Impact factor: 9.139

6.  Estimated prevalence of exposure to occupational carcinogens in Australia (2011-2012).

Authors:  Renee N Carey; Timothy R Driscoll; Susan Peters; Deborah C Glass; Alison Reid; Geza Benke; Lin Fritschi
Journal:  Occup Environ Med       Date:  2013-10-24       Impact factor: 4.402

7.  Inside the black box: starting to uncover the underlying decision rules used in a one-by-one expert assessment of occupational exposure in case-control studies.

Authors:  David C Wheeler; Igor Burstyn; Roel Vermeulen; Kai Yu; Susan M Shortreed; Anjoeka Pronk; Patricia A Stewart; Joanne S Colt; Dalsu Baris; Margaret R Karagas; Molly Schwenn; Alison Johnson; Debra T Silverman; Melissa C Friesen
Journal:  Occup Environ Med       Date:  2012-11-15       Impact factor: 4.402

8.  Rule-based exposure assessment versus case-by-case expert assessment using the same information in a community-based study.

Authors:  Susan Peters; Deborah C Glass; Elizabeth Milne; Lin Fritschi
Journal:  Occup Environ Med       Date:  2013-11-12       Impact factor: 4.402

9.  Searching remote homology with spectral clustering with symmetry in neighborhood cluster kernels.

Authors:  Ujjwal Maulik; Anasua Sarkar
Journal:  PLoS One       Date:  2013-02-15       Impact factor: 3.240

10.  Genomic profiling of oral squamous cell carcinoma by array-based comparative genomic hybridization.

Authors:  Shunichi Yoshioka; Yoshiyuki Tsukamoto; Naoki Hijiya; Chisato Nakada; Tomohisa Uchida; Keiko Matsuura; Ichiro Takeuchi; Masao Seto; Kenji Kawano; Masatsugu Moriyama
Journal:  PLoS One       Date:  2013-02-14       Impact factor: 3.240

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  6 in total

1.  Exposures to Volatile Organic Compounds among Healthcare Workers: Modeling the Effects of Cleaning Tasks and Product Use.

Authors:  Feng-Chiao Su; Melissa C Friesen; Aleksandr B Stefaniak; Paul K Henneberger; Ryan F LeBouf; Marcia L Stanton; Xiaoming Liang; Michael Humann; M Abbas Virji
Journal:  Ann Work Expo Health       Date:  2018-08-13       Impact factor: 2.179

Review 2.  Use and Reliability of Exposure Assessment Methods in Occupational Case-Control Studies in the General Population: Past, Present, and Future.

Authors:  Calvin B Ge; Melissa C Friesen; Hans Kromhout; Susan Peters; Nathaniel Rothman; Qing Lan; Roel Vermeulen
Journal:  Ann Work Expo Health       Date:  2018-11-12       Impact factor: 2.179

Review 3.  Using Decision Rules to Assess Occupational Exposure in Population-Based Studies.

Authors:  Jean-François Sauvé; Melissa C Friesen
Journal:  Curr Environ Health Rep       Date:  2019-09

4.  Current asthma and asthma-like symptoms among workers at a Veterans Administration Medical Center.

Authors:  Laura Kurth; Mohammed Abbas Virji; Eileen Storey; Susan Framberg; Christa Kallio; Jordan Fink; Anthony Scott Laney
Journal:  Int J Hyg Environ Health       Date:  2017-09-05       Impact factor: 5.840

5.  Associations of Metrics of Peak Inhalation Exposure and Skin Exposure Indices With Beryllium Sensitization at a Beryllium Manufacturing Facility.

Authors:  M Abbas Virji; Christine R Schuler; Jean Cox-Ganser; Marcia L Stanton; Michael S Kent; Kathleen Kreiss; Aleksandr B Stefaniak
Journal:  Ann Work Expo Health       Date:  2019-10-11       Impact factor: 2.179

6.  Testing and Validating Semi-automated Approaches to the Occupational Exposure Assessment of Polycyclic Aromatic Hydrocarbons.

Authors:  Albeliz Santiago-Colón; Carissa M Rocheleau; Stephen Bertke; Annette Christianson; Devon T Collins; Emma Trester-Wilson; Wayne Sanderson; Martha A Waters; Jennita Reefhuis
Journal:  Ann Work Expo Health       Date:  2021-07-03       Impact factor: 2.179

  6 in total

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