Literature DB >> 25476551

Integrative chemical biology approaches for identification and characterization of "erasers" for fatty-acid-acylated lysine residues within proteins.

Zheng Liu1, Tangpo Yang, Xin Li, Tao Peng, Howard C Hang, Xiang David Li.   

Abstract

Acylation of proteins with fatty acids is important for the regulation of membrane association, trafficking, subcellular localization, and activity of many cellular proteins. While significant progress has been made in our understanding of the two major forms of protein acylation with fatty acids, N-myristoylation and S-palmitoylation, studies of the acylation of lysine residues, within proteins, with fatty acids have lagged behind. Demonstrated here is the use of integrative chemical biology approaches to examine human sirtuins as de-fatty-acid acylases in vitro and in cells. Photo-crosslinking chemistry is used to investigate enzymes which recognize fatty-acid acylated lysine. Human Sirt2 was identified as a robust lysine de-fatty-acid acylase in vitro. The results also show that Sirt2 can regulate the acylation of lysine residues, of proteins, with fatty acids within cells.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  click chemistry; fatty acids; peptides; photochemistry; protein modifications

Mesh:

Substances:

Year:  2014        PMID: 25476551      PMCID: PMC4382910          DOI: 10.1002/anie.201408763

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  17 in total

Review 1.  The biology and enzymology of protein N-myristoylation.

Authors:  T A Farazi; G Waksman; J I Gordon
Journal:  J Biol Chem       Date:  2001-08-29       Impact factor: 5.157

Review 2.  The biochemistry of sirtuins.

Authors:  Anthony A Sauve; Cynthia Wolberger; Vern L Schramm; Jef D Boeke
Journal:  Annu Rev Biochem       Date:  2006       Impact factor: 23.643

Review 3.  Palmitoylation of ligands, receptors, and intracellular signaling molecules.

Authors:  Marilyn D Resh
Journal:  Sci STKE       Date:  2006-10-31

4.  Chaperone suppression of alpha-synuclein toxicity in a Drosophila model for Parkinson's disease.

Authors:  Pavan K Auluck; H Y Edwin Chan; John Q Trojanowski; Virginia M Y Lee; Nancy M Bonini
Journal:  Science       Date:  2001-12-20       Impact factor: 47.728

5.  Activation of the protein deacetylase SIRT6 by long-chain fatty acids and widespread deacylation by mammalian sirtuins.

Authors:  Jessica L Feldman; Josue Baeza; John M Denu
Journal:  J Biol Chem       Date:  2013-09-18       Impact factor: 5.157

Review 6.  Trafficking and signaling by fatty-acylated and prenylated proteins.

Authors:  Marilyn D Resh
Journal:  Nat Chem Biol       Date:  2006-11       Impact factor: 15.040

Review 7.  Palmitoylation: policing protein stability and traffic.

Authors:  Maurine E Linder; Robert J Deschenes
Journal:  Nat Rev Mol Cell Biol       Date:  2007-01       Impact factor: 94.444

8.  Transcriptional silencing and longevity protein Sir2 is an NAD-dependent histone deacetylase.

Authors:  S Imai; C M Armstrong; M Kaeberlein; L Guarente
Journal:  Nature       Date:  2000-02-17       Impact factor: 49.962

9.  Myristyl acylation of the tumor necrosis factor alpha precursor on specific lysine residues.

Authors:  F T Stevenson; S L Bursten; R M Locksley; D H Lovett
Journal:  J Exp Med       Date:  1992-10-01       Impact factor: 14.307

10.  The 31-kDa precursor of interleukin 1 alpha is myristoylated on specific lysines within the 16-kDa N-terminal propiece.

Authors:  F T Stevenson; S L Bursten; C Fanton; R M Locksley; D H Lovett
Journal:  Proc Natl Acad Sci U S A       Date:  1993-08-01       Impact factor: 11.205

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  20 in total

Review 1.  Chemical reporters for exploring protein acylation.

Authors:  Emmanuelle Thinon; Howard C Hang
Journal:  Biochem Soc Trans       Date:  2015-04       Impact factor: 5.407

2.  The Cysteine-rich Domain of the DHHC3 Palmitoyltransferase Is Palmitoylated and Contains Tightly Bound Zinc.

Authors:  Colin D Gottlieb; Sheng Zhang; Maurine E Linder
Journal:  J Biol Chem       Date:  2015-10-20       Impact factor: 5.157

3.  Deacylation Mechanism by SIRT2 Revealed in the 1'-SH-2'-O-Myristoyl Intermediate Structure.

Authors:  Yi Wang; Yi Man Eva Fung; Weizhe Zhang; Bin He; Matthew Wai Heng Chung; Jing Jin; Jing Hu; Hening Lin; Quan Hao
Journal:  Cell Chem Biol       Date:  2017-03-09       Impact factor: 8.116

Review 4.  Fatty acylation of proteins: The long and the short of it.

Authors:  Marilyn D Resh
Journal:  Prog Lipid Res       Date:  2016-05-24       Impact factor: 16.195

5.  Molecular Imaging of Sirtuin1 Expression-Activity in Rat Brain Using Positron-Emission Tomography-Magnetic-Resonance Imaging with [18F]-2-Fluorobenzoylaminohexanoicanilide.

Authors:  Robin Bonomi; Vadim Popov; Maxwell T Laws; David Gelovani; Anjoy Majhi; Aleksandr Shavrin; Xin Lu; Otto Muzik; Nashaat Turkman; Renshyan Liu; Thomas Mangner; Juri G Gelovani
Journal:  J Med Chem       Date:  2018-08-13       Impact factor: 7.446

Review 6.  Proteomic analysis of fatty-acylated proteins.

Authors:  Tao Peng; Emmanuelle Thinon; Howard C Hang
Journal:  Curr Opin Chem Biol       Date:  2015-12-02       Impact factor: 8.822

7.  A SIRT2-Selective Inhibitor Promotes c-Myc Oncoprotein Degradation and Exhibits Broad Anticancer Activity.

Authors:  Hui Jing; Jing Hu; Bin He; Yashira L Negrón Abril; Jack Stupinski; Keren Weiser; Marisa Carbonaro; Ying-Ling Chiang; Teresa Southard; Paraskevi Giannakakou; Robert S Weiss; Hening Lin
Journal:  Cancer Cell       Date:  2016-03-14       Impact factor: 31.743

8.  Human Sirtuin 2 Localization, Transient Interactions, and Impact on the Proteome Point to Its Role in Intracellular Trafficking.

Authors:  Hanna G Budayeva; Ileana M Cristea
Journal:  Mol Cell Proteomics       Date:  2016-08-08       Impact factor: 5.911

Review 9.  Uncovering post-translational modification-associated protein-protein interactions.

Authors:  Shu Wang; Arianna O Osgood; Abhishek Chatterjee
Journal:  Curr Opin Struct Biol       Date:  2022-03-22       Impact factor: 7.786

10.  Seeding for sirtuins: microseed matrix seeding to obtain crystals of human Sirt3 and Sirt2 suitable for soaking.

Authors:  Tobias Rumpf; Stefan Gerhardt; Oliver Einsle; Manfred Jung
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-11-18       Impact factor: 1.056

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