Literature DB >> 25476412

Predict brain MR image registration via sparse learning of appearance and transformation.

Qian Wang1, Minjeong Kim2, Yonghong Shi3, Guorong Wu2, Dinggang Shen4.   

Abstract

We propose a new approach to register the subject image with the template by leveraging a set of intermediate images that are pre-aligned to the template. We argue that, if points in the subject and the intermediate images share similar local appearances, they may have common correspondence in the template. In this way, we learn the sparse representation of a certain subject point to reveal several similar candidate points in the intermediate images. Each selected intermediate candidate can bridge the correspondence from the subject point to the template space, thus predicting the transformation associated with the subject point at the confidence level that relates to the learned sparse coefficient. Following this strategy, we first predict transformations at selected key points, and retain multiple predictions on each key point, instead of allowing only a single correspondence. Then, by utilizing all key points and their predictions with varying confidences, we adaptively reconstruct the dense transformation field that warps the subject to the template. We further embed the prediction-reconstruction protocol above into a multi-resolution hierarchy. In the final, we refine our estimated transformation field via existing registration method in effective manners. We apply our method to registering brain MR images, and conclude that the proposed framework is competent to improve registration performances substantially.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Brain MR image registration; Correspondence detection; Deformable image registration; Sparsity learning; Transformation prediction

Mesh:

Year:  2014        PMID: 25476412      PMCID: PMC4294959          DOI: 10.1016/j.media.2014.10.007

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  21 in total

1.  A global optimisation method for robust affine registration of brain images.

Authors:  M Jenkinson; S Smith
Journal:  Med Image Anal       Date:  2001-06       Impact factor: 8.545

2.  Improved optimization for the robust and accurate linear registration and motion correction of brain images.

Authors:  Mark Jenkinson; Peter Bannister; Michael Brady; Stephen Smith
Journal:  Neuroimage       Date:  2002-10       Impact factor: 6.556

3.  Multiple cortical surface correspondence using pairwise shape similarity.

Authors:  Pahal Dalal; Feng Shi; Dinggang Shen; Song Wang
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

4.  Construction of a 3D probabilistic atlas of human cortical structures.

Authors:  David W Shattuck; Mubeena Mirza; Vitria Adisetiyo; Cornelius Hojatkashani; Georges Salamon; Katherine L Narr; Russell A Poldrack; Robert M Bilder; Arthur W Toga
Journal:  Neuroimage       Date:  2007-11-26       Impact factor: 6.556

5.  Diffeomorphic demons: efficient non-parametric image registration.

Authors:  Tom Vercauteren; Xavier Pennec; Aymeric Perchant; Nicholas Ayache
Journal:  Neuroimage       Date:  2008-11-07       Impact factor: 6.556

Review 6.  Deformable medical image registration: a survey.

Authors:  Aristeidis Sotiras; Christos Davatzikos; Nikos Paragios
Journal:  IEEE Trans Med Imaging       Date:  2013-05-31       Impact factor: 10.048

7.  Directed graph based image registration.

Authors:  Hongjun Jia; Guorong Wu; Qian Wang; Yaping Wang; Minjeong Kim; Dinggang Shen
Journal:  Comput Med Imaging Graph       Date:  2011-10-19       Impact factor: 4.790

8.  TPS-HAMMER: improving HAMMER registration algorithm by soft correspondence matching and thin-plate splines based deformation interpolation.

Authors:  Guorong Wu; Pew-Thian Yap; Minjeong Kim; Dinggang Shen
Journal:  Neuroimage       Date:  2009-10-28       Impact factor: 6.556

9.  RABBIT: rapid alignment of brains by building intermediate templates.

Authors:  Songyuan Tang; Yong Fan; Guorong Wu; Minjeong Kim; Dinggang Shen
Journal:  Neuroimage       Date:  2009-03-10       Impact factor: 6.556

10.  LEAP: learning embeddings for atlas propagation.

Authors:  Robin Wolz; Paul Aljabar; Joseph V Hajnal; Alexander Hammers; Daniel Rueckert
Journal:  Neuroimage       Date:  2009-10-06       Impact factor: 6.556

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  9 in total

1.  BIRNet: Brain image registration using dual-supervised fully convolutional networks.

Authors:  Jingfan Fan; Xiaohuan Cao; Pew-Thian Yap; Dinggang Shen
Journal:  Med Image Anal       Date:  2019-03-22       Impact factor: 8.545

2.  Quicksilver: Fast predictive image registration - A deep learning approach.

Authors:  Xiao Yang; Roland Kwitt; Martin Styner; Marc Niethammer
Journal:  Neuroimage       Date:  2017-07-11       Impact factor: 6.556

3.  Unsupervised Learning for Spherical Surface Registration.

Authors:  Fenqiang Zhao; Zhengwang Wu; Li Wang; Weili Lin; Shunren Xia; Dinggang Shen; Gang Li
Journal:  Mach Learn Med Imaging       Date:  2020-09-29

4.  Deformable Image Registration based on Similarity-Steered CNN Regression.

Authors:  Xiaohuan Cao; Jianhua Yang; Jun Zhang; Dong Nie; Min-Jeong Kim; Qian Wang; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2017-09-04

5.  Surface-constrained volumetric registration for the early developing brain.

Authors:  Sahar Ahmad; Zhengwang Wu; Gang Li; Li Wang; Weili Lin; Pew-Thian Yap; Dinggang Shen
Journal:  Med Image Anal       Date:  2019-08-01       Impact factor: 8.545

6.  Brain Atlas Fusion from High-Thickness Diagnostic Magnetic Resonance Images by Learning-Based Super-Resolution.

Authors:  Jinpeng Zhang; Lichi Zhang; Lei Xiang; Yeqin Shao; Guorong Wu; Xiaodong Zhou; Dinggang Shen; Qian Wang
Journal:  Pattern Recognit       Date:  2016-09-29       Impact factor: 7.740

7.  Prediction of Infant MRI Appearance and Anatomical Structure Evolution using Sparse Patch-based Metamorphosis Learning Framework.

Authors:  Islem Rekik; Gang Li; Guorong Wu; Weili Lin; Dinggang Shen
Journal:  Patch Based Tech Med Imaging (2015)       Date:  2016-01-08

8.  Deformable Image Registration Using a Cue-Aware Deep Regression Network.

Authors:  Xiaohuan Cao; Jianhua Yang; Jun Zhang; Qian Wang; Pew-Thian Yap; Dinggang Shen
Journal:  IEEE Trans Biomed Eng       Date:  2018-04-04       Impact factor: 4.538

9.  Construction of a neonatal cortical surface atlas using Multimodal Surface Matching in the Developing Human Connectome Project.

Authors:  Jelena Bozek; Antonios Makropoulos; Andreas Schuh; Sean Fitzgibbon; Robert Wright; Matthew F Glasser; Timothy S Coalson; Jonathan O'Muircheartaigh; Jana Hutter; Anthony N Price; Lucilio Cordero-Grande; Rui Pedro A G Teixeira; Emer Hughes; Nora Tusor; Kelly Pegoretti Baruteau; Mary A Rutherford; A David Edwards; Joseph V Hajnal; Stephen M Smith; Daniel Rueckert; Mark Jenkinson; Emma C Robinson
Journal:  Neuroimage       Date:  2018-06-14       Impact factor: 6.556

  9 in total

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