Literature DB >> 25473326

Streamlining the use of BOLD specimen data to record species distributions: a case study with ten Nearctic species of Microgastrinae (Hymenoptera: Braconidae).

Jose L Fernandez-Triana1, Lyubomir Penev2, Sujeevan Ratnasingham3, M Alex Smith4, Jayme Sones3, Angela Telfer3, Jeremy R deWaard5, Paul D N Hebert5.   

Abstract

The Barcode of Life Data Systems (BOLD) is designed to support the generation and application of DNA barcode data, but it also provides a unique source of data with potential for many research uses. This paper explores the streamlining of BOLD specimen data to record species distributions - and its fast publication using the Biodiversity Data Journal (BDJ), and its authoring platform, the Pensoft Writing Tool (PWT). We selected a sample of 630 specimens and 10 species of a highly diverse group of parasitoid wasps (Hymenoptera: Braconidae, Microgastrinae) from the Nearctic region and used the information in BOLD to uncover a significant number of new records (of locality, provinces, territories and states). By converting specimen information (such as locality, collection date, collector, voucher depository) from the BOLD platform to the Excel template provided by the PWT, it is possible to quickly upload and generate long lists of "Material Examined" for papers discussing taxonomy, ecology and/or new distribution records of species. For the vast majority of publications including DNA barcodes, the generation and publication of ancillary data associated with the barcoded material is seldom highlighted and often disregarded, and the analysis of those data sets to uncover new distribution patterns of species has rarely been explored, even though many BOLD records represent new and/or significant discoveries. The introduction of journals specializing in - and streamlining - the release of these datasets, such as the BDJ, should facilitate thorough analysis of these records, as shown in this paper.

Keywords:  Barcode of Life Data Systems; Microgastrinae; Nearctic; Pensoft Writing Tool; Species distribution records; streamlining data

Year:  2014        PMID: 25473326      PMCID: PMC4251541          DOI: 10.3897/BDJ.2.e4153

Source DB:  PubMed          Journal:  Biodivers Data J        ISSN: 1314-2828


  5 in total

1.  DNA barcoding and the taxonomy of Microgastrinae wasps (Hymenoptera, Braconidae): impacts after 8 years and nearly 20 000 sequences.

Authors:  M Alex Smith; J L Fernández-Triana; E Eveleigh; J Gómez; C Guclu; W Hallwachs; P D N Hebert; J Hrcek; J T Huber; D Janzen; P G Mason; S Miller; D L J Quicke; J J Rodriguez; R Rougerie; M R Shaw; G Várkonyi; D F Ward; J B Whitfield; A Zaldívar-Riverón
Journal:  Mol Ecol Resour       Date:  2012-12-11       Impact factor: 7.090

2.  Eight new species and an annotated checklist of Microgastrinae (Hymenoptera, Braconidae) from Canada and Alaska.

Authors:  Jose L Fernández-Triana
Journal:  Zookeys       Date:  2010-10-19       Impact factor: 1.546

3.  Semantic tagging of and semantic enhancements to systematics papers: ZooKeys working examples.

Authors:  Lyubomir Penev; Donat Agosti; Teodor Georgiev; Terry Catapano; Jeremy Miller; Vladimir Blagoderov; David Roberts; Vincent S Smith; Irina Brake; Simon Ryrcroft; Ben Scott; Norman F Johnson; Robert A Morris; Guido Sautter; Vishwas Chavan; Tim Robertson; David Remsen; Pavel Stoev; Cynthia Parr; Sandra Knapp; W John Kress; Chris F Thompson; Terry Erwin
Journal:  Zookeys       Date:  2010-06-30       Impact factor: 1.546

4.  A DNA-based registry for all animal species: the barcode index number (BIN) system.

Authors:  Sujeevan Ratnasingham; Paul D N Hebert
Journal:  PLoS One       Date:  2013-07-08       Impact factor: 3.240

5.  Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal.

Authors:  Vincent Smith; Teodor Georgiev; Pavel Stoev; Jordan Biserkov; Jeremy Miller; Laurence Livermore; Edward Baker; Daniel Mietchen; Thomas L P Couvreur; Gregory Mueller; Torsten Dikow; Kristofer M Helgen; Jiři Frank; Donat Agosti; David Roberts; Lyubomir Penev
Journal:  Biodivers Data J       Date:  2013-09-16
  5 in total
  3 in total

1.  First record of the genus Venanus (Hymenoptera: Braconidae: Microgastrinae) in Mesoamerica, with the description of two new species from Costa Rica.

Authors:  Jose L Fernandez-Triana; James B Whitfield; M Alex Smith; Winnie Hallwachs; Daniel H Janzen
Journal:  Biodivers Data J       Date:  2014-11-13

2.  A biodiversity hotspot for Microgastrinae (Hymenoptera, Braconidae) in North America: annotated species checklist for Ottawa, Canada.

Authors:  Jose Fernandez-Triana; Caroline Boudreault; Joel Buffam; Ronald Mclean
Journal:  Zookeys       Date:  2016-11-17       Impact factor: 1.546

3.  The School Malaise Trap Program: Coupling educational outreach with scientific discovery.

Authors:  Dirk Steinke; Vanessa Breton; Emily Berzitis; Paul D N Hebert
Journal:  PLoS Biol       Date:  2017-04-24       Impact factor: 8.029

  3 in total

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