Literature DB >> 25472994

JUNB is a key transcriptional modulator of macrophage activation.

Mary F Fontana1, Alyssa Baccarella1, Nidhi Pancholi1, Miles A Pufall2, De'Broski R Herbert1, Charles C Kim3.   

Abstract

Activated macrophages are crucial for restriction of microbial infection but may also promote inflammatory pathology in a wide range of both infectious and sterile conditions. The pathways that regulate macrophage activation are therefore of great interest. Recent studies in silico have putatively identified key transcription factors that may control macrophage activation, but experimental validation is lacking. In this study, we generated a macrophage regulatory network from publicly available microarray data, employing steps to enrich for physiologically relevant interactions. Our analysis predicted a novel relationship between the AP-1 family transcription factor Junb and the gene Il1b, encoding the pyrogen IL-1β, which macrophages express upon activation by inflammatory stimuli. Previously, Junb has been characterized primarily as a negative regulator of the cell cycle, whereas AP-1 activity in myeloid inflammatory responses has largely been attributed to c-Jun. We confirmed experimentally that Junb is required for full expression of Il1b, and of additional genes involved in classical inflammation, in macrophages treated with LPS and other immunostimulatory molecules. Furthermore, Junb modulates expression of canonical markers of alternative activation in macrophages treated with IL-4. Our results demonstrate that JUNB is a significant modulator of both classical and alternative macrophage activation. Further, this finding provides experimental validation for our network modeling approach, which will facilitate the future use of gene expression data from open databases to reveal novel, physiologically relevant regulatory relationships.
Copyright © 2014 by The American Association of Immunologists, Inc.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 25472994      PMCID: PMC4431620          DOI: 10.4049/jimmunol.1401595

Source DB:  PubMed          Journal:  J Immunol        ISSN: 0022-1767            Impact factor:   5.422


  40 in total

1.  Selective and antagonistic functions of SWI/SNF and Mi-2beta nucleosome remodeling complexes during an inflammatory response.

Authors:  Vladimir R Ramirez-Carrozzi; Aaron A Nazarian; Caiyi C Li; Sarah L Gore; Rupa Sridharan; Anthony N Imbalzano; Stephen T Smale
Journal:  Genes Dev       Date:  2006-02-01       Impact factor: 11.361

2.  Reverse engineering cellular networks.

Authors:  Adam A Margolin; Kai Wang; Wei Keat Lim; Manjunath Kustagi; Ilya Nemenman; Andrea Califano
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

3.  Reverse engineering of regulatory networks in human B cells.

Authors:  Katia Basso; Adam A Margolin; Gustavo Stolovitzky; Ulf Klein; Riccardo Dalla-Favera; Andrea Califano
Journal:  Nat Genet       Date:  2005-03-20       Impact factor: 38.330

4.  A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling.

Authors:  Vladimir R Ramirez-Carrozzi; Daniel Braas; Dev M Bhatt; Christine S Cheng; Christine Hong; Kevin R Doty; Joshua C Black; Alexander Hoffmann; Michael Carey; Stephen T Smale
Journal:  Cell       Date:  2009-07-10       Impact factor: 41.582

5.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

Review 6.  Signal integration by JNK and p38 MAPK pathways in cancer development.

Authors:  Erwin F Wagner; Angel R Nebreda
Journal:  Nat Rev Cancer       Date:  2009-08       Impact factor: 60.716

7.  Role of c-Jun N-terminal kinase on lipopolysaccharide induced maturation of human monocyte-derived dendritic cells.

Authors:  Takeshi Nakahara; Hiroshi Uchi; Kazunori Urabe; Qijie Chen; Masutaka Furue; Yoichi Moroi
Journal:  Int Immunol       Date:  2004-10-11       Impact factor: 4.823

8.  ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context.

Authors:  Adam A Margolin; Ilya Nemenman; Katia Basso; Chris Wiggins; Gustavo Stolovitzky; Riccardo Dalla Favera; Andrea Califano
Journal:  BMC Bioinformatics       Date:  2006-03-20       Impact factor: 3.169

9.  Macrophage activation and polarization: nomenclature and experimental guidelines.

Authors:  Peter J Murray; Judith E Allen; Subhra K Biswas; Edward A Fisher; Derek W Gilroy; Sergij Goerdt; Siamon Gordon; John A Hamilton; Lionel B Ivashkiv; Toby Lawrence; Massimo Locati; Alberto Mantovani; Fernando O Martinez; Jean-Louis Mege; David M Mosser; Gioacchino Natoli; Jeroen P Saeij; Joachim L Schultze; Kari Ann Shirey; Antonio Sica; Jill Suttles; Irina Udalova; Jo A van Ginderachter; Stefanie N Vogel; Thomas A Wynn
Journal:  Immunity       Date:  2014-07-17       Impact factor: 31.745

10.  HTRIdb: an open-access database for experimentally verified human transcriptional regulation interactions.

Authors:  Luiz A Bovolenta; Marcio L Acencio; Ney Lemke
Journal:  BMC Genomics       Date:  2012-08-17       Impact factor: 3.969

View more
  39 in total

1.  Cardiac resynchronization therapy reduces expression of inflammation-promoting genes related to interleukin-1β in heart failure.

Authors:  Kenneth Bilchick; Hema Kothari; Aditya Narayan; James Garmey; Abdullah Omar; Brian Capaldo; Coleen McNamara
Journal:  Cardiovasc Res       Date:  2020-06-01       Impact factor: 10.787

2.  Myeloid expression of the AP-1 transcription factor JUNB modulates outcomes of type 1 and type 2 parasitic infections.

Authors:  M F Fontana; A Baccarella; D Kellar; T K Oniskey; P Terinate; S D Rosenberg; E J Huang; D R Herbert; C C Kim
Journal:  Parasite Immunol       Date:  2015-09       Impact factor: 2.280

3.  Geometric Sketching Compactly Summarizes the Single-Cell Transcriptomic Landscape.

Authors:  Brian Hie; Hyunghoon Cho; Benjamin DeMeo; Bryan Bryson; Bonnie Berger
Journal:  Cell Syst       Date:  2019-06-05       Impact factor: 10.304

Review 4.  Transcriptional control of microglia phenotypes in health and disease.

Authors:  Inge R Holtman; Dylan Skola; Christopher K Glass
Journal:  J Clin Invest       Date:  2017-07-31       Impact factor: 14.808

5.  Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics.

Authors:  Sugata Roy; Sebastian Schmeier; Erik Arner; Tanvir Alam; Suraj P Parihar; Mumin Ozturk; Ousman Tamgue; Hideya Kawaji; Michiel J L de Hoon; Masayoshi Itoh; Timo Lassmann; Piero Carninci; Yoshihide Hayashizaki; Alistair R R Forrest; Vladimir B Bajic; Reto Guler; Frank Brombacher; Harukazu Suzuki
Journal:  Nucleic Acids Res       Date:  2015-06-27       Impact factor: 16.971

6.  Antigen presenting cell response to polysaccharide A is characterized by the generation of anti-inflammatory macrophages.

Authors:  Julie Y Zhou; David Zhou; Kevin Telfer; Kalob Reynero; Mark B Jones; John Hambor; Brian A Cobb
Journal:  Glycobiology       Date:  2022-03-19       Impact factor: 4.313

7.  Parabiosis and single-cell RNA sequencing reveal a limited contribution of monocytes to myofibroblasts in kidney fibrosis.

Authors:  Rafael Kramann; Flavia Machado; Haojia Wu; Tetsuro Kusaba; Konrad Hoeft; Rebekka K Schneider; Benjamin D Humphreys
Journal:  JCI Insight       Date:  2018-05-03

8.  Contribution of Human Fibroblasts and Endothelial Cells to the Hallmarks of Inflammation as Determined by Proteome Profiling.

Authors:  Astrid Slany; Andrea Bileck; Dominique Kreutz; Rupert L Mayer; Besnik Muqaku; Christopher Gerner
Journal:  Mol Cell Proteomics       Date:  2016-03-29       Impact factor: 5.911

9.  The neutrotime transcriptional signature defines a single continuum of neutrophils across biological compartments.

Authors:  Ricardo Grieshaber-Bouyer; Felix A Radtke; Pierre Cunin; Giuseppina Stifano; Anaïs Levescot; Brinda Vijaykumar; Nathan Nelson-Maney; Rachel B Blaustein; Paul A Monach; Peter A Nigrovic
Journal:  Nat Commun       Date:  2021-05-17       Impact factor: 14.919

10.  Monocytic differentiation and AHR signaling as Primary Nodes of BET Inhibitor Response in Acute Myeloid Leukemia.

Authors:  Kyle A Romine; Tamilla Nechiporuk; Daniel Bottomly; Sophia Jeng; Shannon K McWeeney; Andy Kaempf; M Ryan Corces; Ravindra Majeti; Jeffrey W Tyner
Journal:  Blood Cancer Discov       Date:  2021-07-01
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.