Literature DB >> 25469626

Managing the computational chemistry big data problem: the ioChem-BD platform.

M Álvarez-Moreno1, C de Graaf, N López, F Maseras, J M Poblet, C Bo.   

Abstract

We present the ioChem-BD platform ( www.iochem-bd.org ) as a multiheaded tool aimed to manage large volumes of quantum chemistry results from a diverse group of already common simulation packages. The platform has an extensible structure. The key modules managing the main tasks are to (i) upload of output files from common computational chemistry packages, (ii) extract meaningful data from the results, and (iii) generate output summaries in user-friendly formats. A heavy use of the Chemical Mark-up Language (CML) is made in the intermediate files used by ioChem-BD. From them and using XSL techniques, we manipulate and transform such chemical data sets to fulfill researchers' needs in the form of HTML5 reports, supporting information, and other research media.

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Year:  2014        PMID: 25469626     DOI: 10.1021/ci500593j

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  45 in total

1.  ExcelAutomat: a tool for systematic processing of files as applied to quantum chemical calculations.

Authors:  Jalal Z A Laloo; Nassirah Laloo; Lydia Rhyman; Ponnadurai Ramasami
Journal:  J Comput Aided Mol Des       Date:  2017-06-17       Impact factor: 3.686

2.  Entropic contributions enhance polarity compensation for CeO2(100) surfaces.

Authors:  Marçal Capdevila-Cortada; Núria López
Journal:  Nat Mater       Date:  2016-11-21       Impact factor: 43.841

3.  Deceptive Complexity in Formation of Cleistantha-8,12-diene.

Authors:  Jin Liang; Amy T Merrill; Croix J Laconsay; Anwei Hou; Qingyu Pu; Jeroen S Dickschat; Dean J Tantillo; Qiang Wang; Reuben J Peters
Journal:  Org Lett       Date:  2022-04-06       Impact factor: 6.072

4.  Water oxidation electrocatalysis using ruthenium coordination oligomers adsorbed on multiwalled carbon nanotubes.

Authors:  Md Asmaul Hoque; Marcos Gil-Sepulcre; Adiran de Aguirre; Johannes A A W Elemans; Dooshaye Moonshiram; Roc Matheu; Yuanyuan Shi; Jordi Benet-Buchholz; Xavier Sala; Marc Malfois; Eduardo Solano; Joohyun Lim; Alba Garzón-Manjón; Christina Scheu; Mario Lanza; Feliu Maseras; Carolina Gimbert-Suriñach; Antoni Llobet
Journal:  Nat Chem       Date:  2020-09-28       Impact factor: 24.427

5.  Single crystal structures and theoretical calculations of uranium endohedral metallofullerenes (U@C2n , 2n = 74, 82) show cage isomer dependent oxidation states for U.

Authors:  Wenting Cai; Roser Morales-Martínez; Xingxing Zhang; Daniel Najera; Elkin L Romero; Alejandro Metta-Magaña; Antonio Rodríguez-Fortea; Skye Fortier; Ning Chen; Josep M Poblet; Luis Echegoyen
Journal:  Chem Sci       Date:  2017-05-22       Impact factor: 9.825

6.  Combining Machine Learning and Computational Chemistry for Predictive Insights Into Chemical Systems.

Authors:  John A Keith; Valentin Vassilev-Galindo; Bingqing Cheng; Stefan Chmiela; Michael Gastegger; Klaus-Robert Müller; Alexandre Tkatchenko
Journal:  Chem Rev       Date:  2021-07-07       Impact factor: 60.622

7.  U2N@I h(7)-C80: fullerene cage encapsulating an unsymmetrical U(iv)[double bond, length as m-dash]N[double bond, length as m-dash]U(v) cluster.

Authors:  Xiaomeng Li; Yannick Roselló; Yang-Rong Yao; Jiaxin Zhuang; Xingxing Zhang; Antonio Rodríguez-Fortea; Coen de Graaf; Luis Echegoyen; Josep M Poblet; Ning Chen
Journal:  Chem Sci       Date:  2020-10-27       Impact factor: 9.825

8.  The Effect of Added Ligands on the Reactions of [Ni(COD)(dppf)] with Alkyl Halides: Halide Abstraction May Be Reversible.

Authors:  Megan E Greaves; Thomas O Ronson; Feliu Maseras; David J Nelson
Journal:  Organometallics       Date:  2021-06-16       Impact factor: 3.876

9.  Understanding polyoxometalates as water oxidation catalysts through iron vs. cobalt reactivity.

Authors:  Khalid Azmani; Maria Besora; Joaquín Soriano-López; Meriem Landolsi; Anne-Lucie Teillout; Pedro de Oliveira; Israël-Martyr Mbomekallé; Josep M Poblet; José-Ramón Galán-Mascarós
Journal:  Chem Sci       Date:  2021-05-19       Impact factor: 9.825

10.  Halide Abstraction Competes with Oxidative Addition in the Reactions of Aryl Halides with [Ni(PMen Ph(3-n) )4 ].

Authors:  Ignacio Funes-Ardoiz; David J Nelson; Feliu Maseras
Journal:  Chemistry       Date:  2017-11-20       Impact factor: 5.236

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