Literature DB >> 25468352

Systems mechanobiology: tension-inhibited protein turnover is sufficient to physically control gene circuits.

P C Dave P Dingal1, Dennis E Discher2.   

Abstract

Mechanotransduction pathways convert forces that stress and strain structures within cells into gene expression levels that impact development, homeostasis, and disease. The levels of some key structural proteins in the nucleus, cytoskeleton, or extracellular matrix have been recently reported to scale with tissue- and cell-level forces or mechanical properties such as stiffness, and so the mathematics of mechanotransduction becomes important to understand. Here, we show that if a given structural protein positively regulates its own gene expression, then stresses need only inhibit degradation of that protein to achieve stable, mechanosensitive gene expression. This basic use-it-or-lose-it module is illustrated by application to meshworks of nuclear lamin A, minifilaments of myosin II, and extracellular matrix collagen fibers—all of which possess filamentous coiled-coil/supercoiled structures. Past experiments not only suggest that tension suppresses protein degradation mediated and/or initiated by various enzymes but also that transcript levels vary with protein levels because key transcription factors are regulated by these structural proteins. Coupling between modules occurs within single cells and between cells in tissue, as illustrated during embryonic heart development where cardiac fibroblasts make collagen that cardiomyocytes contract. With few additional assumptions, the basic module has sufficient physics to control key structural genes in both development and disease.
Copyright © 2014 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 25468352      PMCID: PMC4255197          DOI: 10.1016/j.bpj.2014.10.042

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  36 in total

1.  β1- and αv-class integrins cooperate to regulate myosin II during rigidity sensing of fibronectin-based microenvironments.

Authors:  Herbert B Schiller; Michaela-Rosemarie Hermann; Julien Polleux; Timothée Vignaud; Sara Zanivan; Caroline C Friedel; Zhiqi Sun; Aurelia Raducanu; Kay-E Gottschalk; Manuel Théry; Matthias Mann; Reinhard Fässler
Journal:  Nat Cell Biol       Date:  2013-05-26       Impact factor: 28.824

2.  Cellular mechanotransduction relies on tension-induced and chaperone-assisted autophagy.

Authors:  Anna Ulbricht; Felix J Eppler; Victor E Tapia; Peter F M van der Ven; Nico Hampe; Nils Hersch; Padmanabhan Vakeel; Daniela Stadel; Albert Haas; Paul Saftig; Christian Behrends; Dieter O Fürst; Rudolf Volkmer; Bernd Hoffmann; Waldemar Kolanus; Jörg Höhfeld
Journal:  Curr Biol       Date:  2013-02-21       Impact factor: 10.834

3.  Matrix elasticity regulates lamin-A,C phosphorylation and turnover with feedback to actomyosin.

Authors:  Amnon Buxboim; Joe Swift; Jerome Irianto; Kyle R Spinler; P C Dave P Dingal; Avathamsa Athirasala; Yun-Ruei C Kao; Sangkyun Cho; Takamasa Harada; Jae-Won Shin; Dennis E Discher
Journal:  Curr Biol       Date:  2014-08-07       Impact factor: 10.834

4.  Tensional homeostasis in single fibroblasts.

Authors:  Kevin D Webster; Win Pin Ng; Daniel A Fletcher
Journal:  Biophys J       Date:  2014-07-01       Impact factor: 4.033

5.  Isolated nuclei adapt to force and reveal a mechanotransduction pathway in the nucleus.

Authors:  Christophe Guilluy; Lukas D Osborne; Laurianne Van Landeghem; Lisa Sharek; Richard Superfine; Rafael Garcia-Mata; Keith Burridge
Journal:  Nat Cell Biol       Date:  2014-03-09       Impact factor: 28.824

6.  Mechanical load induces a 100-fold increase in the rate of collagen proteolysis by MMP-1.

Authors:  Arjun S Adhikari; Jack Chai; Alexander R Dunn
Journal:  J Am Chem Soc       Date:  2011-01-19       Impact factor: 15.419

7.  Heart-specific stiffening in early embryos parallels matrix and myosin expression to optimize beating.

Authors:  Stephanie Majkut; Timon Idema; Joe Swift; Christine Krieger; Andrea Liu; Dennis E Discher
Journal:  Curr Biol       Date:  2013-11-21       Impact factor: 10.834

8.  Adhesion functions in cell sorting by mechanically coupling the cortices of adhering cells.

Authors:  Jean-Léon Maître; Hélène Berthoumieux; Simon Frederik Gabriel Krens; Guillaume Salbreux; Frank Jülicher; Ewa Paluch; Carl-Philipp Heisenberg
Journal:  Science       Date:  2012-08-23       Impact factor: 47.728

9.  Crawling from soft to stiff matrix polarizes the cytoskeleton and phosphoregulates myosin-II heavy chain.

Authors:  Matthew Raab; Joe Swift; P C Dave P Dingal; Palak Shah; Jae-Won Shin; Dennis E Discher
Journal:  J Cell Biol       Date:  2012-11-05       Impact factor: 10.539

10.  A kinetic model for RNA-interference of focal adhesions.

Authors:  Max Hoffmann; Ulrich S Schwarz
Journal:  BMC Syst Biol       Date:  2013-01-12
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  16 in total

Review 1.  Microtubule mechanics in the working myocyte.

Authors:  Patrick Robison; Benjamin L Prosser
Journal:  J Physiol       Date:  2017-03-09       Impact factor: 5.182

Review 2.  New perspectives on the development of muscle contractures following central motor lesions.

Authors:  J Pingel; E M Bartels; J B Nielsen
Journal:  J Physiol       Date:  2016-12-07       Impact factor: 5.182

Review 3.  Cellular mechanosensing of the biophysical microenvironment: A review of mathematical models of biophysical regulation of cell responses.

Authors:  Bo Cheng; Min Lin; Guoyou Huang; Yuhui Li; Baohua Ji; Guy M Genin; Vikram S Deshpande; Tian Jian Lu; Feng Xu
Journal:  Phys Life Rev       Date:  2017-06-21       Impact factor: 11.025

4.  How can we predict cellular mechanosensation?: Comment on "Cellular mechanosensing of the biophysical microenvironment: A review of mathematical models of biophysical regulation of cell responses" by Bo Cheng et al.

Authors:  Jingwen Wu; Philip LeDuc; Robert Steward
Journal:  Phys Life Rev       Date:  2017-09-01       Impact factor: 11.025

5.  Flow-Induced Crystallization of Collagen: A Potentially Critical Mechanism in Early Tissue Formation.

Authors:  Jeffrey A Paten; Seyed Mohammad Siadat; Monica E Susilo; Ebraheim N Ismail; Jayson L Stoner; Jonathan P Rothstein; Jeffrey W Ruberti
Journal:  ACS Nano       Date:  2016-04-27       Impact factor: 15.881

6.  Mechanosensing by the Lamina Protects against Nuclear Rupture, DNA Damage, and Cell-Cycle Arrest.

Authors:  Sangkyun Cho; Manasvita Vashisth; Amal Abbas; Stephanie Majkut; Kenneth Vogel; Yuntao Xia; Irena L Ivanovska; Jerome Irianto; Manorama Tewari; Kuangzheng Zhu; Elisia D Tichy; Foteini Mourkioti; Hsin-Yao Tang; Roger A Greenberg; Benjamin L Prosser; Dennis E Discher
Journal:  Dev Cell       Date:  2019-05-16       Impact factor: 13.417

7.  Fractal heterogeneity in minimal matrix models of scars modulates stiff-niche stem-cell responses via nuclear exit of a mechanorepressor.

Authors:  P C Dave P Dingal; Andrew M Bradshaw; Sangkyun Cho; Matthew Raab; Amnon Buxboim; Joe Swift; Dennis E Discher
Journal:  Nat Mater       Date:  2015-07-13       Impact factor: 43.841

Review 8.  Mechanosensing by the nucleus: From pathways to scaling relationships.

Authors:  Sangkyun Cho; Jerome Irianto; Dennis E Discher
Journal:  J Cell Biol       Date:  2017-01-02       Impact factor: 10.539

Review 9.  Mechanical regulation of gene expression in cardiac myocytes and fibroblasts.

Authors:  Jeffrey J Saucerman; Philip M Tan; Kyle S Buchholz; Andrew D McCulloch; Jeffrey H Omens
Journal:  Nat Rev Cardiol       Date:  2019-06       Impact factor: 32.419

10.  Transcription upregulation via force-induced direct stretching of chromatin.

Authors:  Arash Tajik; Yuejin Zhang; Fuxiang Wei; Jian Sun; Qiong Jia; Wenwen Zhou; Rishi Singh; Nimish Khanna; Andrew S Belmont; Ning Wang
Journal:  Nat Mater       Date:  2016-08-22       Impact factor: 43.841

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