Literature DB >> 25460803

Multilayer chromosome organization through DNA bending, bridging and extrusion.

Stephan Gruber1.   

Abstract

All living cells have to master the extraordinarily extended and tangly nature of genomic DNA molecules — in particular during cell division when sister chromosomes are resolved from one another and confined to opposite halves of a cell. Bacteria have evolved diverse sets of proteins, which collectively ensure the formation of compact and yet highly dynamic nucleoids. Some of these players act locally by changing the path of DNA through the bending of its double helical backbone. Other proteins have wider or even global impact on chromosome organization, for example by interconnecting two distant segments of chromosomal DNA or by actively relocating DNA within a cell. Here, I highlight different modes of chromosome organization in bacteria and on this basis consider models for the function of SMC protein complexes, whose mechanism of action is only poorly understood so far.

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Year:  2014        PMID: 25460803     DOI: 10.1016/j.mib.2014.09.018

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  24 in total

1.  SMC condensin: promoting cohesion of replicon arms.

Authors:  Frank Bürmann; Stephan Gruber
Journal:  Nat Struct Mol Biol       Date:  2015-09       Impact factor: 15.369

Review 2.  Towards a Unified Model of SMC Complex Function.

Authors:  Markus Hassler; Indra A Shaltiel; Christian H Haering
Journal:  Curr Biol       Date:  2018-11-05       Impact factor: 10.834

Review 3.  Genome folding through loop extrusion by SMC complexes.

Authors:  Iain F Davidson; Jan-Michael Peters
Journal:  Nat Rev Mol Cell Biol       Date:  2021-03-25       Impact factor: 94.444

4.  Bacterial chromosome organization by collective dynamics of SMC condensins.

Authors:  Christiaan A Miermans; Chase P Broedersz
Journal:  J R Soc Interface       Date:  2018-10-17       Impact factor: 4.118

5.  Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.

Authors:  Gordana Wutz; Csilla Várnai; Kota Nagasaka; David A Cisneros; Roman R Stocsits; Wen Tang; Stefan Schoenfelder; Gregor Jessberger; Matthias Muhar; M Julius Hossain; Nike Walther; Birgit Koch; Moritz Kueblbeck; Jan Ellenberg; Johannes Zuber; Peter Fraser; Jan-Michael Peters
Journal:  EMBO J       Date:  2017-12-07       Impact factor: 11.598

Review 6.  The 3D Genome as Moderator of Chromosomal Communication.

Authors:  Job Dekker; Leonid Mirny
Journal:  Cell       Date:  2016-03-10       Impact factor: 41.582

7.  Adenovirus major core protein condenses DNA in clusters and bundles, modulating genome release and capsid internal pressure.

Authors:  Natalia Martín-González; Mercedes Hernando-Pérez; Gabriela N Condezo; Marta Pérez-Illana; Antonio Šiber; David Reguera; Philomena Ostapchuk; Patrick Hearing; Carmen San Martín; Pedro J de Pablo
Journal:  Nucleic Acids Res       Date:  2019-09-26       Impact factor: 16.971

8.  Formation of Chromosomal Domains by Loop Extrusion.

Authors:  Geoffrey Fudenberg; Maxim Imakaev; Carolyn Lu; Anton Goloborodko; Nezar Abdennur; Leonid A Mirny
Journal:  Cell Rep       Date:  2016-05-19       Impact factor: 9.423

Review 9.  Subcellular Organization: A Critical Feature of Bacterial Cell Replication.

Authors:  Ivan V Surovtsev; Christine Jacobs-Wagner
Journal:  Cell       Date:  2018-03-08       Impact factor: 41.582

10.  Chromosome segregation drives division site selection in Streptococcus pneumoniae.

Authors:  Renske van Raaphorst; Morten Kjos; Jan-Willem Veening
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-03       Impact factor: 11.205

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