Literature DB >> 25436970

Molecular structures of fluid phosphatidylethanolamine bilayers obtained from simulation-to-experiment comparisons and experimental scattering density profiles.

Norbert Kučerka1, Brad van Oosten, Jianjun Pan, Frederick A Heberle, Thad A Harroun, John Katsaras.   

Abstract

Following our previous efforts in determining the structures of commonly used PC, PG, and PS bilayers, we continue our studies of fully hydrated, fluid phase PE bilayers. The newly designed parsing scheme for PE bilayers was based on extensive MD simulations, and is utilized in the SDP analysis of both X-ray and neutron (contrast varied) scattering measurements. Obtained experimental scattering form factors are directly compared to our simulation results, and can serve as a benchmark for future developed force fields. Among the evaluated structural parameters, namely, area per lipid A, overall bilayer thickness DB, and hydrocarbon region thickness 2DC, the PE bilayer response to changing temperature is similar to previously studied bilayers with different headgroups. On the other hand, the reduced hydration of PE headgroups, as well as the strong hydrogen bonding between PE headgroups, dramatically affects lateral packing within the bilayer. Despite sharing the same glycerol backbone, a markedly smaller area per lipid distinguishes PE from other bilayers (i.e., PC, PG, and PS) studied to date. Overall, our data are consistent with the notion that lipid headgroups govern bilayer packing, while hydrocarbon chains dominate the bilayer's response to temperature changes.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 25436970     DOI: 10.1021/jp511159q

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  28 in total

1.  DHA Modifies the Size and Composition of Raftlike Domains: A Solid-State 2H NMR Study.

Authors:  Jacob J Kinnun; Robert Bittman; Saame Raza Shaikh; Stephen R Wassall
Journal:  Biophys J       Date:  2018-01-23       Impact factor: 4.033

2.  Drude Polarizable Force Field for Molecular Dynamics Simulations of Saturated and Unsaturated Zwitterionic Lipids.

Authors:  Hui Li; Janamejaya Chowdhary; Lei Huang; Xibing He; Alexander D MacKerell; Benoît Roux
Journal:  J Chem Theory Comput       Date:  2017-08-08       Impact factor: 6.006

3.  Determination of bending rigidity and tilt modulus of lipid membranes from real-space fluctuation analysis of molecular dynamics simulations.

Authors:  M Doktorova; D Harries; G Khelashvili
Journal:  Phys Chem Chem Phys       Date:  2017-06-28       Impact factor: 3.676

4.  The host-defense peptide piscidin P1 reorganizes lipid domains in membranes and decreases activation energies in mechanosensitive ion channels.

Authors:  Fatih Comert; Alexander Greenwood; Joseph Maramba; Roderico Acevedo; Laura Lucas; Thulasi Kulasinghe; Leah S Cairns; Yi Wen; Riqiang Fu; Janet Hammer; Jack Blazyk; Sergei Sukharev; Myriam L Cotten; Mihaela Mihailescu
Journal:  J Biol Chem       Date:  2019-10-16       Impact factor: 5.157

5.  Membrane Disruption Mechanism of a Prion Peptide (106-126) Investigated by Atomic Force Microscopy, Raman and Electron Paramagnetic Resonance Spectroscopy.

Authors:  Jianjun Pan; Prasana K Sahoo; Annalisa Dalzini; Zahra Hayati; Chinta M Aryal; Peng Teng; Jianfeng Cai; Humberto Rodriguez Gutierrez; Likai Song
Journal:  J Phys Chem B       Date:  2017-05-10       Impact factor: 2.991

6.  Accelerating Membrane Simulations with Hydrogen Mass Repartitioning.

Authors:  Curtis Balusek; Hyea Hwang; Chun Hon Lau; Karl Lundquist; Anthony Hazel; Anna Pavlova; Diane L Lynch; Patricia H Reggio; Yi Wang; James C Gumbart
Journal:  J Chem Theory Comput       Date:  2019-07-02       Impact factor: 6.006

7.  Molecular Structure of Sphingomyelin in Fluid Phase Bilayers Determined by the Joint Analysis of Small-Angle Neutron and X-ray Scattering Data.

Authors:  Milka Doktorova; Norbert Kučerka; Jacob J Kinnun; Jianjun Pan; Drew Marquardt; Haden L Scott; Richard M Venable; Richard W Pastor; Stephen R Wassall; John Katsaras; Frederick A Heberle
Journal:  J Phys Chem B       Date:  2020-06-16       Impact factor: 2.991

8.  Simulation of lipid bilayer self-assembly using all-atom lipid force fields.

Authors:  Åge A Skjevik; Benjamin D Madej; Callum J Dickson; Charles Lin; Knut Teigen; Ross C Walker; Ian R Gould
Journal:  Phys Chem Chem Phys       Date:  2016-04-01       Impact factor: 3.676

9.  Membrane Interactions of Cy3 and Cy5 Fluorophores and Their Effects on Membrane-Protein Dynamics.

Authors:  Kin Lam; Emad Tajkhorshid
Journal:  Biophys J       Date:  2020-06-02       Impact factor: 4.033

10.  CHARMM36 Lipid Force Field with Explicit Treatment of Long-Range Dispersion: Parametrization and Validation for Phosphatidylethanolamine, Phosphatidylglycerol, and Ether Lipids.

Authors:  Yalun Yu; Andreas Krämer; Richard M Venable; Bernard R Brooks; Jeffery B Klauda; Richard W Pastor
Journal:  J Chem Theory Comput       Date:  2021-02-23       Impact factor: 6.006

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.