Literature DB >> 25433003

Comparison of ordinal and nominal classification trees to predict ordinal expert-based occupational exposure estimates in a case-control study.

David C Wheeler1, Kellie J Archer2, Igor Burstyn3, Kai Yu4, Patricia A Stewart5, Joanne S Colt6, Dalsu Baris6, Margaret R Karagas7, Molly Schwenn8, Alison Johnson9, Karla Armenti10, Debra T Silverman6, Melissa C Friesen6.   

Abstract

OBJECTIVES: To evaluate occupational exposures in case-control studies, exposure assessors typically review each job individually to assign exposure estimates. This process lacks transparency and does not provide a mechanism for recreating the decision rules in other studies. In our previous work, nominal (unordered categorical) classification trees (CTs) generally successfully predicted expert-assessed ordinal exposure estimates (i.e. none, low, medium, high) derived from occupational questionnaire responses, but room for improvement remained. Our objective was to determine if using recently developed ordinal CTs would improve the performance of nominal trees in predicting ordinal occupational diesel exhaust exposure estimates in a case-control study.
METHODS: We used one nominal and four ordinal CT methods to predict expert-assessed probability, intensity, and frequency estimates of occupational diesel exhaust exposure (each categorized as none, low, medium, or high) derived from questionnaire responses for the 14983 jobs in the New England Bladder Cancer Study. To replicate the common use of a single tree, we applied each method to a single sample of 70% of the jobs, using 15% to test and 15% to validate each method. To characterize variability in performance, we conducted a resampling analysis that repeated the sample draws 100 times. We evaluated agreement between the tree predictions and expert estimates using Somers' d, which measures differences in terms of ordinal association between predicted and observed scores and can be interpreted similarly to a correlation coefficient.
RESULTS: From the resampling analysis, compared with the nominal tree, an ordinal CT method that used a quadratic misclassification function and controlled tree size based on total misclassification cost had a slightly better predictive performance that was statistically significant for the frequency metric (Somers' d: nominal tree = 0.61; ordinal tree = 0.63) and similar performance for the probability (nominal = 0.65; ordinal = 0.66) and intensity (nominal = 0.65; ordinal = 0.65) metrics. The best ordinal CT predicted fewer cases of large disagreement with the expert assessments (i.e. no exposure predicted for a job with high exposure and vice versa) compared with the nominal tree across all of the exposure metrics. For example, the percent of jobs with expert-assigned high intensity of exposure that the model predicted as no exposure was 29% for the nominal tree and 22% for the best ordinal tree.
CONCLUSIONS: The overall agreements were similar across CT models; however, the use of ordinal models reduced the magnitude of the discrepancy when disagreements occurred. As the best performing model can vary by situation, researchers should consider evaluating multiple CT methods to maximize the predictive performance within their data.
© The Author 2014. Published by Oxford University Press on behalf of the British Occupational Hygiene Society.

Entities:  

Keywords:  classification; diesel exhaust; occupational exposure; ordinal data; statistical learning

Mesh:

Substances:

Year:  2014        PMID: 25433003      PMCID: PMC4365762          DOI: 10.1093/annhyg/meu098

Source DB:  PubMed          Journal:  Ann Occup Hyg        ISSN: 0003-4878


  9 in total

1.  Sharing the knowledge gained from occupational cohort studies: a call for action.

Authors:  Thomas Behrens; Birte Mester; Lin Fritschi
Journal:  Occup Environ Med       Date:  2012-01-02       Impact factor: 4.402

2.  Occupation and bladder cancer in a population-based case-control study in Northern New England.

Authors:  Joanne S Colt; Margaret R Karagas; Molly Schwenn; Dalsu Baris; Alison Johnson; Patricia Stewart; Castine Verrill; Lee E Moore; Jay Lubin; Mary H Ward; Claudine Samanic; Nathaniel Rothman; Kenneth P Cantor; Laura E Beane Freeman; Alan Schned; Sai Cherala; Debra T Silverman
Journal:  Occup Environ Med       Date:  2010-09-23       Impact factor: 4.402

3.  rpartOrdinal: An R Package for Deriving a Classification Tree for Predicting an Ordinal Response.

Authors:  Kellie J Archer
Journal:  J Stat Softw       Date:  2010-04-01       Impact factor: 6.440

4.  Comparison of algorithm-based estimates of occupational diesel exhaust exposure to those of multiple independent raters in a population-based case-control study.

Authors:  Melissa C Friesen; Anjoeka Pronk; David C Wheeler; Yu-Cheng Chen; Sarah J Locke; Dennis D Zaebst; Molly Schwenn; Alison Johnson; Richard Waddell; Dalsu Baris; Joanne S Colt; Debra T Silverman; Patricia A Stewart; Hormuzd A Katki
Journal:  Ann Occup Hyg       Date:  2012-11-25

5.  Estimated prevalence of exposure to occupational carcinogens in Australia (2011-2012).

Authors:  Renee N Carey; Timothy R Driscoll; Susan Peters; Deborah C Glass; Alison Reid; Geza Benke; Lin Fritschi
Journal:  Occup Environ Med       Date:  2013-10-24       Impact factor: 4.402

6.  Comparison of two expert-based assessments of diesel exhaust exposure in a case-control study: programmable decision rules versus expert review of individual jobs.

Authors:  Anjoeka Pronk; Patricia A Stewart; Joseph B Coble; Hormuzd A Katki; David C Wheeler; Joanne S Colt; Dalsu Baris; Molly Schwenn; Margaret R Karagas; Alison Johnson; Richard Waddell; Castine Verrill; Sai Cherala; Debra T Silverman; Melissa C Friesen
Journal:  Occup Environ Med       Date:  2012-07-27       Impact factor: 4.402

7.  Inside the black box: starting to uncover the underlying decision rules used in a one-by-one expert assessment of occupational exposure in case-control studies.

Authors:  David C Wheeler; Igor Burstyn; Roel Vermeulen; Kai Yu; Susan M Shortreed; Anjoeka Pronk; Patricia A Stewart; Joanne S Colt; Dalsu Baris; Margaret R Karagas; Molly Schwenn; Alison Johnson; Debra T Silverman; Melissa C Friesen
Journal:  Occup Environ Med       Date:  2012-11-15       Impact factor: 4.402

8.  Ordinal response prediction using bootstrap aggregation, with application to a high-throughput methylation data set.

Authors:  K J Archer; V R Mas
Journal:  Stat Med       Date:  2009-12-20       Impact factor: 2.373

9.  Rule-based exposure assessment versus case-by-case expert assessment using the same information in a community-based study.

Authors:  Susan Peters; Deborah C Glass; Elizabeth Milne; Lin Fritschi
Journal:  Occup Environ Med       Date:  2013-11-12       Impact factor: 4.402

  9 in total
  6 in total

1.  Combining Decision Rules from Classification Tree Models and Expert Assessment to Estimate Occupational Exposure to Diesel Exhaust for a Case-Control Study.

Authors:  Melissa C Friesen; David C Wheeler; Roel Vermeulen; Sarah J Locke; Dennis D Zaebst; Stella Koutros; Anjoeka Pronk; Joanne S Colt; Dalsu Baris; Margaret R Karagas; Nuria Malats; Molly Schwenn; Alison Johnson; Karla R Armenti; Nathanial Rothman; Patricia A Stewart; Manolis Kogevinas; Debra T Silverman
Journal:  Ann Occup Hyg       Date:  2016-01-04

Review 2.  Use and Reliability of Exposure Assessment Methods in Occupational Case-Control Studies in the General Population: Past, Present, and Future.

Authors:  Calvin B Ge; Melissa C Friesen; Hans Kromhout; Susan Peters; Nathaniel Rothman; Qing Lan; Roel Vermeulen
Journal:  Ann Work Expo Health       Date:  2018-11-12       Impact factor: 2.179

Review 3.  Using Decision Rules to Assess Occupational Exposure in Population-Based Studies.

Authors:  Jean-François Sauvé; Melissa C Friesen
Journal:  Curr Environ Health Rep       Date:  2019-09

4.  Testing and Validating Semi-automated Approaches to the Occupational Exposure Assessment of Polycyclic Aromatic Hydrocarbons.

Authors:  Albeliz Santiago-Colón; Carissa M Rocheleau; Stephen Bertke; Annette Christianson; Devon T Collins; Emma Trester-Wilson; Wayne Sanderson; Martha A Waters; Jennita Reefhuis
Journal:  Ann Work Expo Health       Date:  2021-07-03       Impact factor: 2.179

5.  The major effects of health-related quality of life on 5-year survival prediction among lung cancer survivors: applications of machine learning.

Authors:  Jin-Ah Sim; Young Ae Kim; Ju Han Kim; Jong Mog Lee; Moon Soo Kim; Young Mog Shim; Jae Ill Zo; Young Ho Yun
Journal:  Sci Rep       Date:  2020-07-01       Impact factor: 4.379

6.  Wishful Thinking? Inside the Black Box of Exposure Assessment.

Authors:  Annemarie Money; Christine Robinson; Raymond Agius; Frank de Vocht
Journal:  Ann Occup Hyg       Date:  2016-01-13
  6 in total

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