| Literature DB >> 25431923 |
Enhao Zhang1, Jihang Zhang2, Jun Jin3, Jun Qin4, Huijie Li5, Lan Huang6.
Abstract
Two low oxygen sensors, Egl nine homolog 1 (EGLN1) and hypoxia-inducible factor 1-α inhibitor (HIF-1AN), play pivotal roles in the regulation of HIF-1α, and high altitude adaption may be involved in the pathology of acute mountain sickness (AMS). Here, we aimed to analyze single nucleotide polymorphisms (SNPs) in the untranslated regions of the EGLN1 and HIF-1AN genes and SNPs chosen from a genome-wide adaptation study of the Han Chinese population. To assess the association between EGLN1 and HIF-1AN SNPs and AMS in a Han Chinese population, a case-control study was performed including 190 patients and 190 controls. In total, thirteen SNPs were genotyped using the MassARRAY® MALDI-TOF system. Multiple genetic models were tested; The Akaike's information criterion (AIC) and Bayesian information criterion (BIC) values indicated that the dominant model may serve as the best-fit model for rs12406290 and rs2153364 of significant difference. However, these data were not significant after Bonferroni correction. No significant association was noted between AMS and rs12757362, rs1339894, rs1361384, rs2009873, rs2739513 or rs2486729 before and after Bonferroni correction. Further haplotype analyses indicated the presence of two blocks in EGLN1; one block consists of rs12406290-rs2153364, located upstream of the EGLN1 gene. Carriers of the "GG" haplotype of rs12406290-rs2153364 exhibited an increased risk of AMS after adjustments for age and smoking status. However, no significant association was observed among HIF-1AN 3'-untranslated region (3'-UTR) polymorphisms, haplotype and AMS. Our study indicates that variants in the EGLN1 5'-UTR influence the susceptibility to AMS in a Han Chinese population.Entities:
Mesh:
Substances:
Year: 2014 PMID: 25431923 PMCID: PMC4284677 DOI: 10.3390/ijms151221777
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Demographic characteristics and physiological parameters of study population.
| Demographic Characteristics and Physiological Parameters | AMS+ | AMS− | |
|---|---|---|---|
| Age (year) | 22.7 ± 3.5 | 22.9 ± 3.8 | 0.840 |
| Height (cm) | 171.7 ± 4.9 | 171.7 ± 4.8 | 0.940 |
| Weight (kg) | 64.7 ± 10.4 | 64.7 ± 10.4 | 0.830 |
| Smoking rate (%) | 49.5 | 53.1 | 0.472 |
| Heart rate (bpm) | 86.5 ± 12.9 | 84.7 ± 12.4 | 0.156 |
| SaO2 (%) | 88.1 ± 2.90 | 88.8 ± 2.98 | 0.013 * |
bpm: beat per minute, * p < 0.05
Basic single nucleotide polymorphism (SNP) information.
| rs Number | Gene Name | Allele | Chromosome Position | MAF | HWE |
|---|---|---|---|---|---|
| rs1054399 | C/T | Chr10:100552808 | 0.185 | 0.187 | |
| rs11190613 | C/T | Chr10:100554240 | 0.187 | 0.188 | |
| rs11292 | C/T | Chr10:100553850 | 0.187 | 0.188 | |
| rs11816840 | C/G | Chr10:100549463 | 0.182 | 0.188 | |
| rs3750633 | A/G | Chr10:100548457 | 0.187 | 0.188 | |
| rs12406290 | A/G | Chr 1:231423480 | 0.460 | 0.378 | |
| rs12757362 | C/G | Chr 1:231426746 | 0.060 | 1.000 | |
| rs1339894 | A/G | Chr 1:231424811 | 0.001 | 1.000 | |
| rs1361384 | A/G | Chr 1:231424487 | 0.005 | 0.970 | |
| rs2009873 | A/G | Chr 1:231363490 | 0.420 | 0.487 | |
| rs2153364 | A/G | Chr 1:231424474 | 0.530 | 0.532 | |
| rs2486729 | A/G | Chr 1:231399838 | 0.420 | 0.302 | |
| rs2739513 | A/G | Chr 1:231379455 | 0.430 | 0.541 |
MAF: Minor allele frequency; HWE: Hardy-Weinberg equilibrium.
Single nucleotide polymorphism genetic models and analyses of the association between SNPs and acute mountain sickness (AMS) adjusted for age and smoking status.
| SNP Number | Model | Genotype | AMS+ [ | AMS− [ | OR (95% CI) | AIC | BIC | |
|---|---|---|---|---|---|---|---|---|
| rs12406290 | Codominant | AA | 65 (34.6) | 42 (22.7) | 1.00 | – | – | – |
| AG | 86 (45.7) | 96 (51.9) | 1.74 (1.07–2.84) | – | – | – | ||
| GG | 37 (19.7) | 47 (25.4) | 1.91 (1.06–3.41) | 0.04 | 522.9 | 554.3 | ||
| Dominant | AA | 65 (34.6) | 42 (22.7) | 1.00 | – | – | – | |
| AG + GG | 123 (65.4) | 143 (77.3) | 1.79 (1.13–2.84) | 0.012 * | 521 | 548.5 | ||
| Recessive | AA + AG | 151 (80.3) | 138 (74.6) | 1.00 | – | – | – | |
| GG | 37 (19.7) | 47 (25.4) | 1.34 (0.82–2.19) | 0.24 | 526 | 553.5 | ||
| Overdominant | AA + GG | 102 (54.3) | 89 (48.1) | 1.00 | – | – | – | |
| AG | 86 (45.7) | 96 (51.9) | 1.31 (0.87–1.97) | 0.19 | 525.7 | 553.1 | ||
| Log-additive | – | – | – | 1.40 (1.05–1.87) | 0.022 | 522.1 | 549.6 | |
| rs2153364 | Codominant | AA | 63 (33.5) | 38 (21.1) | 1.00 | – | – | – |
| AG | 88 (46.8) | 95 (52.8) | 1.85 (1.12–3.05) | – | – | – | ||
| GG | 37 (19.7) | 47 (26.1) | 2.14 (1.18–3.88) | 0.019 | 514.4 | 545.6 | ||
| Dominant | AA | 63 (33.5) | 38 (21.1) | 1.00 | – | – | – | |
| AG + GG | 125 (66.5) | 142 (78.9) | 1.94 (1.20–3.11) | 0.0057 * | 512.7 | 540 | ||
| Recessive | AA + AG | 151 (80.3) | 133 (73.9) | 1.00 | – | – | – | |
| GG | 37 (19.7) | 47 (26.1) | 1.43 (0.88–2.34) | 0.15 | 518.2 | 545.6 | ||
| Overdominant | AA + GG | 100 (53.2) | 85 (47.2) | 1.00 | – | – | – | |
| AG | 88 (46.8) | 95 (52.8) | 1.30 (0.86–1.96) | 0.22 | 518.8 | 546.1 | ||
| Log-additive | – | – | – | 1.47 (1.10–1.98) | 0.0095 | 513.6 | 540.9 |
Numbers and frequencies of AMS+ or AMS− in each genotype were shown. AIC: Akaike’s information criterion; BIC: Bayesian information criterion. * Best-fit model p-value.
Figure 1Linkage disequilibrium (LD) plot constructed by Haploview 4.2 software.
Haplotype frequencies and the association with AMS risk adjusted for age and smoking status.
| Gene | Blocks | Haplotype a | Frequency of AMS− (%) | Frequency of AMS+ (%) | Odds Ratio 95% CI | |
|---|---|---|---|---|---|---|
| Global haplotype association test | ||||||
| Block 1 | AA | 60.9 | 54.75 | – | 1.00 b | |
| GG | 39.1 | 43.63 | 0.12 | 1.25 (0.94–1.66) | ||
| Global haplotype association test | ||||||
| Block 2 | AA | 56.83 | 48.92 | – | 1.00 b | |
| GG | 42.1 | 50.79 | 0.029 * | 1.38 (1.04–1.85) | ||
| Global haplotype association test | ||||||
| Block 3 | CTTGG | 90.26 | 90.63 | – | 1.00 b | |
| TCACA | 9.74 | 9.37 | 0.7 | 0.91 (0.57–1.46) | ||
Frequency of each haplotype block was shown in percentage. a, Haplotypes with frequency ≥0.05 were shown; b, Reference haplotype; c, A global test was performed for the null hypothesis such that no haplotype was associated with the risk of AMS. The analyses were adjusted by age and smoking status. * p < 0.05; Block 1 consisted of rs2009873-rs2739513; Block 2 consisted of rs12406290-rs2153364; Block 3 consisted of rs1054399, rs11190613, rs11292, rs11816840 and rs3750633.