Literature DB >> 25421391

Advancing small-molecule-based chemical biology with next-generation sequencing technologies.

Chandran Anandhakumar1, Seiichiro Kizaki, Toshikazu Bando, Ganesh N Pandian, Hiroshi Sugiyama.   

Abstract

Next-generation-sequencing (NGS) technologies enable us to obtain extensive information by deciphering millions of individual DNA sequencing reactions simultaneously. The new DNA-sequencing strategies exceed their precursors in output by many orders of magnitude, resulting in a quantitative increase in valuable sequence information that could be harnessed for qualitative analysis. Sequencing on this scale has facilitated significant advances in diverse disciplines, ranging from the discovery, design, and evaluation of many small molecules and relevant biological mechanisms to maturation of personalized therapies. NGS technologies that have recently become affordable allow us to gain in-depth insight into small-molecule-triggered biological phenomena and empower researchers to develop advanced versions of small molecules. In this review we focus on the overlooked implications of NGS technologies in chemical biology, with a special emphasis on small-molecule development and screening.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  aptamers; chemical biology; genomics; next-generation sequencing; small molecules

Mesh:

Substances:

Year:  2014        PMID: 25421391     DOI: 10.1002/cbic.201402556

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  7 in total

1.  Mechanotransduction Mechanisms for Intraventricular Diastolic Vortex Forces and Myocardial Deformations: Part 2.

Authors:  Ares Pasipoularides
Journal:  J Cardiovasc Transl Res       Date:  2015-05-14       Impact factor: 4.132

Review 2.  Modulation of DNA structure formation using small molecules.

Authors:  Imee M A Del Mundo; Karen M Vasquez; Guliang Wang
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2019-09-03       Impact factor: 4.739

3.  Strong and Specific Recognition of CAG/CTG Repeat DNA (5'-dWGCWGCW-3') by a Cyclic Pyrrole-Imidazole Polyamide.

Authors:  Yuki Hirose; Tomo Ohno; Sefan Asamitsu; Kaori Hashiya; Toshikazu Bando; Hiroshi Sugiyama
Journal:  Chembiochem       Date:  2021-11-18       Impact factor: 3.461

4.  Deciphering the genomic targets of alkylating polyamide conjugates using high-throughput sequencing.

Authors:  Anandhakumar Chandran; Junetha Syed; Rhys D Taylor; Gengo Kashiwazaki; Shinsuke Sato; Kaori Hashiya; Toshikazu Bando; Hiroshi Sugiyama
Journal:  Nucleic Acids Res       Date:  2016-04-20       Impact factor: 16.971

5.  A Class of Diacylglycerol Acyltransferase 1 Inhibitors Identified by a Combination of Phenotypic High-throughput Screening, Genomics, and Genetics.

Authors:  Kirsten Tschapalda; Ya-Qin Zhang; Li Liu; Kseniya Golovnina; Thomas Schlemper; Thomas O Eichmann; Madhu Lal-Nag; Urmila Sreenivasan; John McLenithan; Slava Ziegler; Carole Sztalryd; Achim Lass; Douglas Auld; Brian Oliver; Herbert Waldmann; Zhuyin Li; Min Shen; Matthew B Boxer; Mathias Beller
Journal:  EBioMedicine       Date:  2016-04-16       Impact factor: 8.143

Review 6.  Profiling DNA Methylation Based on Next-Generation Sequencing Approaches: New Insights and Clinical Applications.

Authors:  Daniela Barros-Silva; C Joana Marques; Rui Henrique; Carmen Jerónimo
Journal:  Genes (Basel)       Date:  2018-08-23       Impact factor: 4.096

Review 7.  Entailing the Next-Generation Sequencing and Metabolome for Sustainable Agriculture by Improving Plant Tolerance.

Authors:  Muhammad Furqan Ashraf; Dan Hou; Quaid Hussain; Muhammad Imran; Jialong Pei; Mohsin Ali; Aamar Shehzad; Muhammad Anwar; Ali Noman; Muhammad Waseem; Xinchun Lin
Journal:  Int J Mol Sci       Date:  2022-01-07       Impact factor: 5.923

  7 in total

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