Literature DB >> 25414383

Knowledge-rich temporal relation identification and classification in clinical notes.

Jennifer D'Souza1, Vincent Ng2.   

Abstract

MOTIVATION: We examine the task of temporal relation classification for the clinical domain. Our approach to this task departs from existing ones in that it is (i) 'knowledge-rich', employing sophisticated knowledge derived from discourse relations as well as both domain-independent and domain-dependent semantic relations, and (ii) 'hybrid', combining the strengths of rule-based and learning-based approaches. Evaluation results on the i2b2 Clinical Temporal Relations Challenge corpus show that our approach yields a 17-24% and 8-14% relative reduction in error over a state-of-the-art learning-based baseline system when gold-standard and automatically identified temporal relations are used, respectively. Database URL: http://www.hlt.utdallas.edu/~jld082000/temporal-relations/
© The Author(s) 2014. Published by Oxford University Press.

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Year:  2014        PMID: 25414383      PMCID: PMC4237873          DOI: 10.1093/database/bau109

Source DB:  PubMed          Journal:  Database (Oxford)        ISSN: 1758-0463            Impact factor:   3.451


  5 in total

1.  2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text.

Authors:  Özlem Uzuner; Brett R South; Shuying Shen; Scott L DuVall
Journal:  J Am Med Inform Assoc       Date:  2011-06-16       Impact factor: 4.497

2.  Automatic extraction of relations between medical concepts in clinical texts.

Authors:  Bryan Rink; Sanda Harabagiu; Kirk Roberts
Journal:  J Am Med Inform Assoc       Date:  2011 Sep-Oct       Impact factor: 4.497

3.  Detecting concept relations in clinical text: insights from a state-of-the-art model.

Authors:  Xiaodan Zhu; Colin Cherry; Svetlana Kiritchenko; Joel Martin; Berry de Bruijn
Journal:  J Biomed Inform       Date:  2013-02-04       Impact factor: 6.317

4.  An end-to-end system to identify temporal relation in discharge summaries: 2012 i2b2 challenge.

Authors:  Yan Xu; Yining Wang; Tianren Liu; Junichi Tsujii; Eric I-Chao Chang
Journal:  J Am Med Inform Assoc       Date:  2013-03-06       Impact factor: 4.497

5.  A hybrid system for temporal information extraction from clinical text.

Authors:  Buzhou Tang; Yonghui Wu; Min Jiang; Yukun Chen; Joshua C Denny; Hua Xu
Journal:  J Am Med Inform Assoc       Date:  2013-04-09       Impact factor: 4.497

  5 in total
  2 in total

1.  The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs.

Authors:  Kirk Roberts; Sonya E Shooshan; Laritza Rodriguez; Swapna Abhyankar; Halil Kilicoglu; Dina Demner-Fushman
Journal:  J Biomed Inform       Date:  2015-06-26       Impact factor: 6.317

Review 2.  Temporal data representation, normalization, extraction, and reasoning: A review from clinical domain.

Authors:  Mohcine Madkour; Driss Benhaddou; Cui Tao
Journal:  Comput Methods Programs Biomed       Date:  2016-02-23       Impact factor: 5.428

  2 in total

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