Literature DB >> 25411698

Advances in urinary proteome analysis and applications in systems biology.

Szymon Filip1, Jerome Zoidakis, Antonia Vlahou, Harald Mischak.   

Abstract

The urinary proteome is the focus of many studies due to the ease of urine collection and the relative proteome stability. Systems biology allows the combination of multiple omics studies, forming a link between proteomics, metabolomics, genomics and transcriptomics. In-depth data interpretation is achieved by bioinformatics analysis of -omics data sets. It is expected that the contribution of systems biology to the study of the urinary proteome will offer novel insights. The main focus of this review is on technical aspects of proteomics studies, available tools for systems biology analysis and the application of urinary proteomics in clinical studies and systems biology.

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Year:  2014        PMID: 25411698     DOI: 10.4155/bio.14.210

Source DB:  PubMed          Journal:  Bioanalysis        ISSN: 1757-6180            Impact factor:   2.681


  10 in total

1.  Urine peptidomic biomarkers for diagnosis of patients with systematic lupus erythematosus.

Authors:  M Pejchinovski; J Siwy; W Mullen; H Mischak; M A Petri; L C Burkly; R Wei
Journal:  Lupus       Date:  2017-05-05       Impact factor: 2.911

2.  Integration of 24 Feature Types to Accurately Detect and Predict Seizures Using Scalp EEG Signals.

Authors:  Yinda Zhang; Shuhan Yang; Yang Liu; Yexian Zhang; Bingfeng Han; Fengfeng Zhou
Journal:  Sensors (Basel)       Date:  2018-04-28       Impact factor: 3.576

3.  Comparison of Depletion Strategies for the Enrichment of Low-Abundance Proteins in Urine.

Authors:  Szymon Filip; Konstantinos Vougas; Jerome Zoidakis; Agnieszka Latosinska; William Mullen; Goce Spasovski; Harald Mischak; Antonia Vlahou; Joachim Jankowski
Journal:  PLoS One       Date:  2015-07-24       Impact factor: 3.240

4.  PeptiCKDdb-peptide- and protein-centric database for the investigation of genesis and progression of chronic kidney disease.

Authors:  Magdalena Krochmal; Marco Fernandes; Szymon Filip; Claudia Pontillo; Holger Husi; Jerome Zoidakis; Harald Mischak; Antonia Vlahou; Joachim Jankowski
Journal:  Database (Oxford)       Date:  2016-09-01       Impact factor: 3.451

Review 5.  Ten Years of Proteomics in Bladder Cancer: Progress and Future Directions.

Authors:  Maria Frantzi; Antonia Vlahou
Journal:  Bladder Cancer       Date:  2017-01-27

Review 6.  Approaches to the discovery of non-invasive urinary biomarkers of prostate cancer.

Authors:  Andrej Jedinak; Kevin R Loughlin; Marsha A Moses
Journal:  Oncotarget       Date:  2018-08-21

7.  Molecular Network Analysis of the Urinary Proteome of Alzheimer's Disease Patients.

Authors:  Yumi Watanabe; Yoshitoshi Hirao; Kensaku Kasuga; Takayoshi Tokutake; Yuka Semizu; Kaori Kitamura; Takeshi Ikeuchi; Kazutoshi Nakamura; Tadashi Yamamoto
Journal:  Dement Geriatr Cogn Dis Extra       Date:  2019-02-08

Review 8.  Review of Liquid Chromatography-Mass Spectrometry-Based Proteomic Analyses of Body Fluids to Diagnose Infectious Diseases.

Authors:  Hayoung Lee; Seung Il Kim
Journal:  Int J Mol Sci       Date:  2022-02-16       Impact factor: 5.923

Review 9.  Urinary proteomics and metabolomics studies to monitor bladder health and urological diseases.

Authors:  Zhaohui Chen; Jayoung Kim
Journal:  BMC Urol       Date:  2016-03-22       Impact factor: 2.264

10.  Analytical Performance of ELISA Assays in Urine: One More Bottleneck towards Biomarker Validation and Clinical Implementation.

Authors:  Despina Chatziharalambous; Vasiliki Lygirou; Agnieszka Latosinska; Konstantinos Stravodimos; Antonia Vlahou; Vera Jankowski; Jerome Zoidakis
Journal:  PLoS One       Date:  2016-02-18       Impact factor: 3.240

  10 in total

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