Literature DB >> 25401166

Speeding up Batch Alignment of Large Ontologies Using MapReduce.

Uthayasanker Thayasivam1, Prashant Doshi2.   

Abstract

Real-world ontologies tend to be very large with several containing thousands of entities. Increasingly, ontologies are hosted in repositories, which often compute the alignment between the ontologies. As new ontologies are submitted or ontologies are updated, their alignment with others must be quickly computed. Therefore, aligning several pairs of ontologies quickly becomes a challenge for these repositories. We project this problem as one of batch alignment and show how it may be approached using the distributed computing paradigm of MapReduce. Our approach allows any alignment algorithm to be utilized on a MapReduce architecture. Experiments using four representative alignment algorithms demonstrate flexible and significant speedup of batch alignment of large ontology pairs using MapReduce.

Entities:  

Year:  2013        PMID: 25401166      PMCID: PMC4228964          DOI: 10.1109/ICSC.2013.28

Source DB:  PubMed          Journal:  Proc IEEE Int Conf Semant Comput


  3 in total

1.  The National Center for Biomedical Ontology.

Authors:  Mark A Musen; Natalya F Noy; Nigam H Shah; Patricia L Whetzel; Christopher G Chute; Margaret-Anne Story; Barry Smith
Journal:  J Am Med Inform Assoc       Date:  2011-11-10       Impact factor: 4.497

2.  Creating mappings for ontologies in biomedicine: simple methods work.

Authors:  Amir Ghazvinian; Natalya F Noy; Mark A Musen
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

3.  Inexact Matching of Ontology Graphs Using Expectation-Maximization.

Authors:  Prashant Doshi; Ravikanth Kolli; Christopher Thomas
Journal:  Web Semant       Date:  2009-04-01       Impact factor: 1.897

  3 in total

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