Literature DB >> 20160892

Inexact Matching of Ontology Graphs Using Expectation-Maximization.

Prashant Doshi1, Ravikanth Kolli, Christopher Thomas.   

Abstract

We present a new method for mapping ontology schemas that address similar domains. The problem of ontology matching is crucial since we are witnessing a decentralized development and publication of ontological data. We formulate the problem of inferring a match between two ontologies as a maximum likelihood problem, and solve it using the technique of expectation-maximization (EM). Specifically, we adopt directed graphs as our model for ontology schemas and use a generalized version of EM to arrive at a map between the nodes of the graphs. We exploit the structural, lexical and instance similarity between the graphs, and differ from the previous approaches in the way we utilize them to arrive at, a possibly inexact, match. Inexact matching is the process of finding a best possible match between the two graphs when exact matching is not possible or is computationally difficult. In order to scale the method to large ontologies, we identify the computational bottlenecks and adapt the generalized EM by using a memory bounded partitioning scheme. We provide comparative experimental results in support of our method on two well-known ontology alignment benchmarks and discuss their implications.

Entities:  

Year:  2009        PMID: 20160892      PMCID: PMC2774838          DOI: 10.1016/j.websem.2008.12.001

Source DB:  PubMed          Journal:  Web Semant        ISSN: 1570-8268            Impact factor:   1.897


  2 in total

1.  A reference ontology for biomedical informatics: the Foundational Model of Anatomy.

Authors:  Cornelius Rosse; José L V Mejino
Journal:  J Biomed Inform       Date:  2003-12       Impact factor: 6.317

2.  Identification of common molecular subsequences.

Authors:  T F Smith; M S Waterman
Journal:  J Mol Biol       Date:  1981-03-25       Impact factor: 5.469

  2 in total
  2 in total

1.  Speeding up Batch Alignment of Large Ontologies Using MapReduce.

Authors:  Uthayasanker Thayasivam; Prashant Doshi
Journal:  Proc IEEE Int Conf Semant Comput       Date:  2013-09

Review 2.  Experiences from the anatomy track in the ontology alignment evaluation initiative.

Authors:  Zlatan Dragisic; Valentina Ivanova; Huanyu Li; Patrick Lambrix
Journal:  J Biomed Semantics       Date:  2017-12-04
  2 in total

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