| Literature DB >> 25399782 |
Abayomi S Faponle1, Matthew G Quesne, Chivukula V Sastri, Frédéric Banse, Sam P de Visser.
Abstract
Heme and nonEntities:
Keywords: cytochrome P450; density functional calculations; enzyme models; hydroxylation; iron
Mesh:
Substances:
Year: 2014 PMID: 25399782 PMCID: PMC4316188 DOI: 10.1002/chem.201404918
Source DB: PubMed Journal: Chemistry ISSN: 0947-6539 Impact factor: 5.236
Figure 1Active site structure of IPNS as taken from the pdb file 1BK0. Amino acids are labelled as in the pdb.
Scheme 1Iron(III)–hydroperoxo model with drawing of the ligand system investigated here.
Figure 2Optimized geometries of 2A1 and 2A2 as obtained with UB3LYP/BS2. Bond lengths are given in angstroms and relative energies in kcal mol−1.
Key geometric features and spin state energies of [(L52)FeIII(OOH)]2+ as obtained from geometry optimized structures using different density functional theory methods and basis sets
| Spin state | Variable[a,b] | B3LYP/BS1 | B3LYP/BS2 | PBE0/BS1 | PBE0/BS2 |
|---|---|---|---|---|---|
| 2 | 1.811/1.506 | 1.797/1.443 | 1.802/1.448 | 1.785/1.421 | |
| Δ | 0.0 | 0.0 | 0.0 | 0.0 | |
| 4 | 1.808/1.507 | 1.789/1.445 | 1.801/1.489 | 1.777/1.424 | |
| Δ | 10.1 | 6.3 | 7.1 | 2.7 | |
| 6 | 1.886/1.471 | 1.871/1.418 | 1.871/1.454 | 1.855/1.399 | |
| Δ | 6.2 | −0.9 | −1.2 | −9.0 |
[a] Bond lengths (r) in angstroms; [b] spin state energies in kcal mol−1 and include zero-point energy (ZPE) corrections.
Scheme 2Reaction Scheme calculated in this work with nomenclature of local minima and transition states. Substrates benzene and anisole were investigated.
Scheme 3Free energies in kcal mol−1 for homolytic and heterolytic O–O bond splitting in the iron(III)–hydroperoxo complex A1.
Figure 3UB3LYP/BS2-optimized geometries of 1,3TS4 with bond lengths in angstroms and the imaginary frequency in wave numbers. Barriers (free energies in solvent) relative to a reactant complex of 3[(L52)FeIV(O)]+C6H6 are given in kcal mol−1.
Figure 4UB3LYP-D3/BS2//UB3LYP/BS2-calculated free energy landscape of benzene hydroxylation by 2,4,6Re with energies in kcal mol−1. Values in parentheses and square brackets contain solvent corrected free energies using UB3LYP-D3/BS2 and UB3LYP/BS2 energies, respectively. Optimized geometries of 2,4,6TSCO are reported with bond lengths in angstroms and the imaginary frequency in the TSCO in wave numbers. The inset gives the IRC scan from 2TSCO,1 and 2TSCO,2 leading to reactants in one direction and to 2IA in the other direction.
Figure 5Optimized geometries of 2,4,6TSCO,1,AN as obtained with UB3LYP/BS1. Dispersion-corrected free energies in the gas phase and with solvent model included are given in kcal mol−1. Optimized geometries of 2,4,6TSCO,1,AN are reported with bond lengths in angstroms and the imaginary frequency in the TS in wave numbers.
Figure 6High-lying occupied and low-lying virtual orbitals of [(L52)FeIII(OOH)]2+, A1.
Figure 7Valence bond curve-crossing diagram for the electrophilic addition of an OH group to an aromatic ring. Dots represent valence electrons and a line (straight or curved) between dots represents a chemical bond.
Scheme 4Thermochemical reaction scheme for the electrophilic addition step for the reaction of [(L52)FeIII(OOH)]2+ with benzene split into individual components. All reaction energies are dispersion-corrected. ΔGsolv values are given in kcal mol−1.
Scheme 5Thermochemical reaction scheme for the electrophilic addition step for the reaction of [(Por)FeIII(OOH)(SH)]− with benzene split into individual components. All reaction energies are dispersion-corrected. ΔGsolv values are given in kcal mol−1.
Figure 8Group spin densities of 2TSCO,1 optimized geometries for benzene (PhH) and anisole (AN) activation by 2A1.
Figure 9Relative orbital energy levels (in kcal mol−1) for [(heme)FeIII(OOH)]− and [(L52)FeIII(OOH)]2+ as established at UB3LYP/BS2. Also shown are LUMO orbitals of both species.