Literature DB >> 25399321

Compensatory mutations occur within the electrostatic interaction range of deleterious mutations in protein structure.

Amrita Bhattacherjee1, Saurav Mallik, Sudip Kundu.   

Abstract

A compensatory mutation (CM) counter balances lethal effects of a deleterious mutation (DM), ensuring the persistence of both through natural selection. However, little is known about the biological aspects of CMs those restore the structural alterations of proteins caused by slightly DMs. Here, by analyzing the evolution of the UDP-glycosyltransferase 73B4 protein among monocot-dicot plants, we investigate the occurrence of CMs around slightly DMs in 3D space. Our results illustrate that CMs exhibit significantly higher tendency to occur within the range of electrostatic interaction around the slightly DMs, compared to occurring randomly in the protein.

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Year:  2014        PMID: 25399321     DOI: 10.1007/s00239-014-9654-8

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  14 in total

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Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

3.  PAML 4: phylogenetic analysis by maximum likelihood.

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Journal:  Mol Biol Evol       Date:  2007-05-04       Impact factor: 16.240

4.  Compensatory mutations are repeatable and clustered within proteins.

Authors:  Brad H Davis; Art F Y Poon; Michael C Whitlock
Journal:  Proc Biol Sci       Date:  2009-02-25       Impact factor: 5.349

5.  Protein structure modeling with MODELLER.

Authors:  Narayanan Eswar; David Eramian; Ben Webb; Min-Yi Shen; Andrej Sali
Journal:  Methods Mol Biol       Date:  2008

6.  Mitochondrial-nuclear interactions and accelerated compensatory evolution: evidence from the primate cytochrome C oxidase complex.

Authors:  Naoki Osada; Hiroshi Akashi
Journal:  Mol Biol Evol       Date:  2011-09-01       Impact factor: 16.240

7.  Compensating for our load of mutations: freezing the meltdown of small populations.

Authors:  A Poon; S P Otto
Journal:  Evolution       Date:  2000-10       Impact factor: 3.694

Review 8.  Adaptation to the deleterious effects of antimicrobial drug resistance mutations by compensatory evolution.

Authors:  Sophie Maisnier-Patin; Dan I Andersson
Journal:  Res Microbiol       Date:  2004-06       Impact factor: 3.992

9.  Sequence and 3D structure based analysis of TNT degrading proteins in Arabidopsis thaliana.

Authors:  Amrita Bhattacherjee; Rahul Shubhra Mandal; Santasabuj Das; Sudip Kundu
Journal:  J Mol Model       Date:  2014-03-04       Impact factor: 1.810

10.  Improved side-chain torsion potentials for the Amber ff99SB protein force field.

Authors:  Kresten Lindorff-Larsen; Stefano Piana; Kim Palmo; Paul Maragakis; John L Klepeis; Ron O Dror; David E Shaw
Journal:  Proteins       Date:  2010-06
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  2 in total

1.  Modular Organization of Residue-Level Contacts Shapes the Selection Pressure on Individual Amino Acid Sites of Ribosomal Proteins.

Authors:  Saurav Mallik; Sudip Kundu
Journal:  Genome Biol Evol       Date:  2017-04-01       Impact factor: 3.416

2.  Plastid-Nuclear Interaction and Accelerated Coevolution in Plastid Ribosomal Genes in Geraniaceae.

Authors:  Mao-Lun Weng; Tracey A Ruhlman; Robert K Jansen
Journal:  Genome Biol Evol       Date:  2016-06-27       Impact factor: 3.416

  2 in total

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