Literature DB >> 25398906

Database resources of the National Center for Biotechnology Information.

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Abstract

The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank(®) nucleic acid sequence database and the PubMed database of citations and abstracts for published life science journals. Additional NCBI resources focus on literature (Bookshelf, PubMed Central (PMC) and PubReader); medical genetics (ClinVar, dbMHC, the Genetic Testing Registry, HIV-1/Human Protein Interaction Database and MedGen); genes and genomics (BioProject, BioSample, dbSNP, dbVar, Epigenomics, Gene, Gene Expression Omnibus (GEO), Genome, HomoloGene, the Map Viewer, Nucleotide, PopSet, Probe, RefSeq, Sequence Read Archive, the Taxonomy Browser, Trace Archive and UniGene); and proteins and chemicals (Biosystems, COBALT, the Conserved Domain Database (CDD), the Conserved Domain Architecture Retrieval Tool (CDART), the Molecular Modeling Database (MMDB), Protein Clusters, Protein and the PubChem suite of small molecule databases). The Entrez system provides search and retrieval operations for many of these databases. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. All of these resources can be accessed through the NCBI home page at http://www.ncbi.nlm.nih.gov. Published by Oxford University Press on behalf of Nucleic Acids Research 2014. This work is written by (a) US Government employee(s) and is in the public domain in the US.

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Year:  2014        PMID: 25398906      PMCID: PMC4383943          DOI: 10.1093/nar/gku1130

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   19.160


  67 in total

1.  PatternHunter: faster and more sensitive homology search.

Authors:  Bin Ma; John Tromp; Ming Li
Journal:  Bioinformatics       Date:  2002-03       Impact factor: 6.937

2.  New models of collaboration in genome-wide association studies: the Genetic Association Information Network.

Authors:  Teri A Manolio; Laura Lyman Rodriguez; Lisa Brooks; Gonçalo Abecasis; Dennis Ballinger; Mark Daly; Peter Donnelly; Stephen V Faraone; Kelly Frazer; Stacey Gabriel; Pablo Gejman; Alan Guttmacher; Emily L Harris; Thomas Insel; John R Kelsoe; Eric Lander; Norma McCowin; Matthew D Mailman; Elizabeth Nabel; James Ostell; Elizabeth Pugh; Stephen Sherry; Patrick F Sullivan; John F Thompson; James Warram; David Wholley; Patrice M Milos; Francis S Collins
Journal:  Nat Genet       Date:  2007-09       Impact factor: 38.330

3.  Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution.

Authors:  Elodie Ghedin; Naomi A Sengamalay; Martin Shumway; Jennifer Zaborsky; Tamara Feldblyum; Vik Subbu; David J Spiro; Jeff Sitz; Hean Koo; Pavel Bolotov; Dmitry Dernovoy; Tatiana Tatusova; Yiming Bao; Kirsten St George; Jill Taylor; David J Lipman; Claire M Fraser; Jeffery K Taubenberger; Steven L Salzberg
Journal:  Nature       Date:  2005-10-05       Impact factor: 49.962

4.  PubChem's BioAssay Database.

Authors:  Yanli Wang; Jewen Xiao; Tugba O Suzek; Jian Zhang; Jiyao Wang; Zhigang Zhou; Lianyi Han; Karen Karapetyan; Svetlana Dracheva; Benjamin A Shoemaker; Evan Bolton; Asta Gindulyte; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2011-12-02       Impact factor: 16.971

5.  MMDB: 3D structures and macromolecular interactions.

Authors:  Thomas Madej; Kenneth J Addess; Jessica H Fong; Lewis Y Geer; Renata C Geer; Christopher J Lanczycki; Chunlei Liu; Shennan Lu; Aron Marchler-Bauer; Anna R Panchenko; Jie Chen; Paul A Thiessen; Yanli Wang; Dachuan Zhang; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2011-12-01       Impact factor: 16.971

6.  Type material in the NCBI Taxonomy Database.

Authors:  Scott Federhen
Journal:  Nucleic Acids Res       Date:  2014-11-14       Impact factor: 19.160

7.  The mouse genome database (MGD): new features facilitating a model system.

Authors:  Janan T Eppig; Judith A Blake; Carol J Bult; James A Kadin; Joel E Richardson
Journal:  Nucleic Acids Res       Date:  2006-11-29       Impact factor: 16.971

8.  Database resources of the National Center for Biotechnology Information.

Authors: 
Journal:  Nucleic Acids Res       Date:  2013-11-19       Impact factor: 16.971

9.  ClinVar: public archive of relationships among sequence variation and human phenotype.

Authors:  Melissa J Landrum; Jennifer M Lee; George R Riley; Wonhee Jang; Wendy S Rubinstein; Deanna M Church; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2013-11-14       Impact factor: 16.971

10.  Current status and new features of the Consensus Coding Sequence database.

Authors:  Catherine M Farrell; Nuala A O'Leary; Rachel A Harte; Jane E Loveland; Laurens G Wilming; Craig Wallin; Mark Diekhans; Daniel Barrell; Stephen M J Searle; Bronwen Aken; Susan M Hiatt; Adam Frankish; Marie-Marthe Suner; Bhanu Rajput; Charles A Steward; Garth R Brown; Ruth Bennett; Michael Murphy; Wendy Wu; Mike P Kay; Jennifer Hart; Jeena Rajan; Janet Weber; Catherine Snow; Lillian D Riddick; Toby Hunt; David Webb; Mark Thomas; Pamela Tamez; Sanjida H Rangwala; Kelly M McGarvey; Shashikant Pujar; Andrei Shkeda; Jonathan M Mudge; Jose M Gonzalez; James G R Gilbert; Stephen J Trevanion; Robert Baertsch; Jennifer L Harrow; Tim Hubbard; James M Ostell; David Haussler; Kim D Pruitt
Journal:  Nucleic Acids Res       Date:  2013-11-11       Impact factor: 16.971

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  155 in total

1.  ncRDeathDB: A comprehensive bioinformatics resource for deciphering network organization of the ncRNA-mediated cell death system.

Authors:  Deng Wu; Yan Huang; Juanjuan Kang; Kongning Li; Xiaoman Bi; Ting Zhang; Nana Jin; Yongfei Hu; Puwen Tan; Lu Zhang; Ying Yi; Wenjun Shen; Jian Huang; Xiaobo Li; Xia Li; Jianzhen Xu; Dong Wang
Journal:  Autophagy       Date:  2015       Impact factor: 16.016

2.  Improving microRNA target prediction by modeling with unambiguously identified microRNA-target pairs from CLIP-ligation studies.

Authors:  Xiaowei Wang
Journal:  Bioinformatics       Date:  2016-01-06       Impact factor: 6.937

3.  Identification of critical variants within SLC44A4, an ulcerative colitis susceptibility gene identified in a GWAS in north Indians.

Authors:  A Gupta; B K Thelma
Journal:  Genes Immun       Date:  2016-01-07       Impact factor: 2.676

4.  Candidate SNP markers of aggressiveness-related complications and comorbidities of genetic diseases are predicted by a significant change in the affinity of TATA-binding protein for human gene promoters.

Authors:  Irina V Chadaeva; Mikhail P Ponomarenko; Dmitry A Rasskazov; Ekaterina B Sharypova; Elena V Kashina; Marina Yu Matveeva; Tatjana V Arshinova; Petr M Ponomarenko; Olga V Arkova; Natalia P Bondar; Ludmila K Savinkova; Nikolay A Kolchanov
Journal:  BMC Genomics       Date:  2016-12-28       Impact factor: 3.969

5.  Computational clustering for viral reference proteomes.

Authors:  Chuming Chen; Hongzhan Huang; Raja Mazumder; Darren A Natale; Peter B McGarvey; Jian Zhang; Shawn W Polson; Yuqi Wang; Cathy H Wu
Journal:  Bioinformatics       Date:  2016-02-26       Impact factor: 6.937

6.  Integrating Genomic Resources with Electronic Health Records using the HL7 Infobutton Standard.

Authors:  Bret S E Heale; Casey Lynnette Overby; Guilherme Del Fiol; Wendy S Rubinstein; Donna R Maglott; Tristan H Nelson; Aleksandar Milosavljevic; Christa L Martin; Scott R Goehringer; Robert Freimuth; Marc S Williams
Journal:  Appl Clin Inform       Date:  2016-08-31       Impact factor: 2.342

7.  A scored human protein-protein interaction network to catalyze genomic interpretation.

Authors:  Taibo Li; Rasmus Wernersson; Rasmus B Hansen; Heiko Horn; Johnathan Mercer; Greg Slodkowicz; Christopher T Workman; Olga Rigina; Kristoffer Rapacki; Hans H Stærfeldt; Søren Brunak; Thomas S Jensen; Kasper Lage
Journal:  Nat Methods       Date:  2016-11-28       Impact factor: 28.547

8.  Development of a Zebrafish S1500+ Sentinel Gene Set for High-Throughput Transcriptomics.

Authors:  Michele R Balik-Meisner; Deepak Mav; Dhiral P Phadke; Logan J Everett; Ruchir R Shah; Tamara Tal; Peter J Shepard; B Alex Merrick; Richard S Paules
Journal:  Zebrafish       Date:  2019-06-12       Impact factor: 1.985

9.  Missense mutations in progranulin gene associated with frontotemporal lobar degeneration: study of pathogenetic features.

Authors:  Celeste M Karch; Lubov Ezerskiy; Veronica Redaelli; Anna Rita Giovagnoli; Pietro Tiraboschi; Giuseppe Pelliccioni; Paolo Pelliccioni; Dimos Kapetis; Ilaria D'Amato; Elena Piccoli; Maria Giulia Ferretti; Fabrizio Tagliavini; Giacomina Rossi
Journal:  Neurobiol Aging       Date:  2015-11-02       Impact factor: 4.673

10.  Structural Perspectives on the Evolutionary Expansion of Unique Protein-Protein Binding Sites.

Authors:  Alexander Goncearenco; Alexey K Shaytan; Benjamin A Shoemaker; Anna R Panchenko
Journal:  Biophys J       Date:  2015-07-23       Impact factor: 4.033

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