Literature DB >> 25398641

Performance of the SMD and SM8 models for predicting solvation free energy of neutral solutes in methanol, dimethyl sulfoxide and acetonitrile.

Caroline C Zanith1, Josefredo R Pliego.   

Abstract

The continuum solvation models SMD and SM8 were developed using 2,346 solvation free energy values for 318 neutral molecules in 91 solvents as reference. However, no solvation data of neutral solutes in methanol was used in the parametrization, while only few solvation free energy values of solutes in dimethyl sulfoxide and acetonitrile were used. In this report, we have tested the performance of the models for these important solvents. Taking data from literature, we have generated solvation free energy, enthalpy and entropy values for 37 solutes in methanol, 21 solutes in dimethyl sulfoxide and 19 solutes in acetonitrile. Both SMD and SM8 models have presented a good performance in methanol and acetonitrile, with mean unsigned error equal or less than 0.66 and 0.55 kcal mol(-1) in methanol and acetonitrile, respectively. However, the correlation is worse in dimethyl sulfoxide, where the SMD and SM8 methods present mean unsigned error of 1.02 and 0.95 kcal mol(-1), respectively. Our results point out the SMx family of models need be improved for dimethyl sulfoxide solvent.

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Year:  2014        PMID: 25398641     DOI: 10.1007/s10822-014-9814-3

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  25 in total

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Authors:  Guilherme Ferreira de Lima; Hélio Anderson Duarte; Josefredo R Pliego
Journal:  J Phys Chem B       Date:  2010-11-15       Impact factor: 2.991

3.  Self-Consistent Reaction Field Model for Aqueous and Nonaqueous Solutions Based on Accurate Polarized Partial Charges.

Authors:  Aleksandr V Marenich; Ryan M Olson; Casey P Kelly; Christopher J Cramer; Donald G Truhlar
Journal:  J Chem Theory Comput       Date:  2007-11       Impact factor: 6.006

4.  A blind challenge for computational solvation free energies: introduction and overview.

Authors:  J Peter Guthrie
Journal:  J Phys Chem B       Date:  2009-04-09       Impact factor: 2.991

5.  Microsolvated transition state models for improved insight into chemical properties and reaction mechanisms.

Authors:  Raghavan B Sunoj; Megha Anand
Journal:  Phys Chem Chem Phys       Date:  2012-08-14       Impact factor: 3.676

6.  Fast prediction of hydration free energies for SAMPL4 blind test from a classical density functional theory.

Authors:  Jia Fu; Yu Liu; Jianzhong Wu
Journal:  J Comput Aided Mol Des       Date:  2014-03-13       Impact factor: 3.686

7.  SAMPL4, a blind challenge for computational solvation free energies: the compounds considered.

Authors:  J Peter Guthrie
Journal:  J Comput Aided Mol Des       Date:  2014-04-06       Impact factor: 3.686

Review 8.  Blind prediction of solvation free energies from the SAMPL4 challenge.

Authors:  David L Mobley; Karisa L Wymer; Nathan M Lim; J Peter Guthrie
Journal:  J Comput Aided Mol Des       Date:  2014-03-11       Impact factor: 3.686

9.  Predictions of hydration free energies from all-atom molecular dynamics simulations.

Authors:  David L Mobley; Christopher I Bayly; Matthew D Cooper; Ken A Dill
Journal:  J Phys Chem B       Date:  2009-04-09       Impact factor: 2.991

10.  Theoretical prediction of pKa in methanol: testing SM8 and SMD models for carboxylic acids, phenols, and amines.

Authors:  Elizabeth L M Miguel; Poliana L Silva; Josefredo R Pliego
Journal:  J Phys Chem B       Date:  2014-05-20       Impact factor: 2.991

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  1 in total

1.  Infinite dilution activity coefficient from SMD calculations: accuracy and performance for predicting liquid-liquid equilibria.

Authors:  Fernando M Lisboa; Josefredo R Pliego
Journal:  J Mol Model       Date:  2018-02-14       Impact factor: 1.810

  1 in total

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