Literature DB >> 25398334

Targeted genome editing in human cells using CRISPR/Cas nucleases and truncated guide RNAs.

Yanfang Fu1, Deepak Reyon1, J Keith Joung2.   

Abstract

CRISPR RNA-guided nucleases have recently emerged as a robust genome-editing platform that functions in a wide range of organisms. To reduce off-target effects of these nucleases, we developed and validated a modified system that uses truncated guide RNAs (tru-gRNAs). The use of tru-gRNAs leads to decreases in off-target effects and does not generally compromise the on-target efficiencies of these genome-editing nucleases. In this chapter, we describe guidelines for identifying potential tru-gRNA target sites and protocols for measuring the on-target efficiencies of CRISPR RNA-guided nucleases in human cells.

Entities:  

Keywords:  CRISPR RNA-guided nucleases; CRISPR/Cas nucleases; Cas9; Genome editing; Off-target effects; Off-target mutations; Truncated guide RNAs

Mesh:

Substances:

Year:  2014        PMID: 25398334     DOI: 10.1016/B978-0-12-801185-0.00002-7

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  20 in total

1.  Genome editing technologies: defining a path to clinic.

Authors:  Jacqueline Corrigan-Curay; Marina O'Reilly; Donald B Kohn; Paula M Cannon; Gang Bao; Frederic D Bushman; Dana Carroll; Toni Cathomen; J Keith Joung; David Roth; Michel Sadelain; Andrew M Scharenberg; Christof von Kalle; Feng Zhang; Robert Jambou; Eugene Rosenthal; Morad Hassani; Aparna Singh; Matthew H Porteus
Journal:  Mol Ther       Date:  2015-05       Impact factor: 11.454

2.  Rationally engineered Cas9 nucleases with improved specificity.

Authors:  Ian M Slaymaker; Linyi Gao; Bernd Zetsche; David A Scott; Winston X Yan; Feng Zhang
Journal:  Science       Date:  2015-12-01       Impact factor: 47.728

3.  Human Induced Pluripotent Stem Cell NEUROG2 Dual Knockin Reporter Lines Generated by the CRISPR/Cas9 System.

Authors:  Shenglan Li; Haipeng Xue; Jianbo Wu; Mahendra S Rao; Dong H Kim; Wenbin Deng; Ying Liu
Journal:  Stem Cells Dev       Date:  2015-11-05       Impact factor: 3.272

Review 4.  CRISPR GENOME SURGERY IN THE RETINA IN LIGHT OF OFF-TARGETING.

Authors:  Galaxy Y Cho; Kellie A Schaefer; Alexander G Bassuk; Stephen H Tsang; Vinit B Mahajan
Journal:  Retina       Date:  2018-08       Impact factor: 4.256

5.  Active-Site Models of Streptococcus pyogenes Cas9 in DNA Cleavage State.

Authors:  Honghai Tang; Hui Yuan; Wenhao Du; Gan Li; Dongmei Xue; Qiang Huang
Journal:  Front Mol Biosci       Date:  2021-04-21

6.  Hypoxia drives transient site-specific copy gain and drug-resistant gene expression.

Authors:  Joshua C Black; Elnaz Atabakhsh; Jaegil Kim; Kelly M Biette; Capucine Van Rechem; Brendon Ladd; Paul D Burrowes; Carlos Donado; Hamid Mattoo; Benjamin P Kleinstiver; Bing Song; Grasiella Andriani; J Keith Joung; Othon Iliopoulos; Cristina Montagna; Shiv Pillai; Gad Getz; Johnathan R Whetstine
Journal:  Genes Dev       Date:  2015-05-15       Impact factor: 11.361

7.  A Comprehensive Toolbox for Genome Editing in Cultured Drosophila melanogaster Cells.

Authors:  Stefan Kunzelmann; Romy Böttcher; Ines Schmidts; Klaus Förstemann
Journal:  G3 (Bethesda)       Date:  2016-06-01       Impact factor: 3.154

8.  Effective gene editing by high-fidelity base editor 2 in mouse zygotes.

Authors:  Puping Liang; Hongwei Sun; Ying Sun; Xiya Zhang; Xiaowei Xie; Jinran Zhang; Zhen Zhang; Yuxi Chen; Chenhui Ding; Yuanyan Xiong; Wenbin Ma; Dan Liu; Junjiu Huang; Zhou Songyang
Journal:  Protein Cell       Date:  2017-06-05       Impact factor: 14.870

9.  Efficient generation of FVII gene knockout mice using CRISPR/Cas9 nuclease and truncated guided RNAs.

Authors:  Liyou An; Yeshu Hu; Shiwei Chang; Xiumei Zhu; Pingping Ling; Fenli Zhang; Jiao Liu; Yanhong Liu; Yexiang Chen; Lan Yang; Giorgio Antonio Presicce; Fuliang Du
Journal:  Sci Rep       Date:  2016-05-03       Impact factor: 4.379

10.  Distinct patterns of Cas9 mismatch tolerance in vitro and in vivo.

Authors:  Becky X H Fu; Robert P St Onge; Andrew Z Fire; Justin D Smith
Journal:  Nucleic Acids Res       Date:  2016-05-19       Impact factor: 16.971

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