Literature DB >> 27014564

Chromatin Dynamics of Circadian Transcription.

Lorena Aguilar-Arnal1, Paolo Sassone-Corsi1.   

Abstract

The molecular circadian clock orchestrates the daily cyclical expression of thousands of genes. Disruption of this transcriptional program leads to a variety of pathologies, including insomnia, depression and metabolic disorders. Circadian rhythms in gene expression rely on specific chromatin transitions which are ultimately coordinated by the molecular clock. As a consequence, a highly plastic and dynamic circadian epigenome can be delineated across different tissues and cell types. Intriguingly, genome topology appears to coordinate cyclic transcription at circadian interactomes, in which circadian genes are in physical contact within the cell nucleus in a time-specific manner. Moreover, the clock machinery shows functional interplays with key metabolic regulators, thereby connecting the circadian epigenome to cellular metabolism. Unraveling the molecular aspects of such interplays is likely to reveal new therapeutic strategies towards the treatment of metabolic disorders.

Entities:  

Keywords:  Circadian rhythms; NAD+; chromatin; epigenetics; sirtuins

Year:  2015        PMID: 27014564      PMCID: PMC4803043          DOI: 10.1007/s40610-015-0001-7

Source DB:  PubMed          Journal:  Curr Mol Biol Rep        ISSN: 2198-6428


  92 in total

1.  Interaction of circadian clock proteins CRY1 and PER2 is modulated by zinc binding and disulfide bond formation.

Authors:  Ira Schmalen; Silke Reischl; Thomas Wallach; Roman Klemz; Astrid Grudziecki; J Rajan Prabu; Christian Benda; Achim Kramer; Eva Wolf
Journal:  Cell       Date:  2014-05-22       Impact factor: 41.582

2.  Time-restricted feeding without reducing caloric intake prevents metabolic diseases in mice fed a high-fat diet.

Authors:  Megumi Hatori; Christopher Vollmers; Amir Zarrinpar; Luciano DiTacchio; Eric A Bushong; Shubhroz Gill; Mathias Leblanc; Amandine Chaix; Matthew Joens; James A J Fitzpatrick; Mark H Ellisman; Satchidananda Panda
Journal:  Cell Metab       Date:  2012-05-17       Impact factor: 27.287

3.  Deviation of innate circadian period from 24 h reduces longevity in mice.

Authors:  Sergiy Libert; Michael S Bonkowski; Kelli Pointer; Scott D Pletcher; Leonard Guarente
Journal:  Aging Cell       Date:  2012-07-12       Impact factor: 9.304

4.  Transactivation mechanisms of mouse clock transcription factors, mClock and mArnt3.

Authors:  S Takahata; T Ozaki; J Mimura; Y Kikuchi; K Sogawa; Y Fujii-Kuriyama
Journal:  Genes Cells       Date:  2000-09       Impact factor: 1.891

5.  The NAD+-dependent deacetylase SIRT1 modulates CLOCK-mediated chromatin remodeling and circadian control.

Authors:  Yasukazu Nakahata; Milota Kaluzova; Benedetto Grimaldi; Saurabh Sahar; Jun Hirayama; Danica Chen; Leonard P Guarente; Paolo Sassone-Corsi
Journal:  Cell       Date:  2008-07-25       Impact factor: 41.582

6.  Circadian acetylome reveals regulation of mitochondrial metabolic pathways.

Authors:  Selma Masri; Vishal R Patel; Kristin L Eckel-Mahan; Shahaf Peleg; Ignasi Forne; Andreas G Ladurner; Pierre Baldi; Axel Imhof; Paolo Sassone-Corsi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-22       Impact factor: 11.205

7.  Histone acetyltransferase-dependent chromatin remodeling and the vascular clock.

Authors:  Anne M Curtis; Sang-beom Seo; Elizabeth J Westgate; Radu Daniel Rudic; Emer M Smyth; Debabrata Chakravarti; Garret A FitzGerald; Peter McNamara
Journal:  J Biol Chem       Date:  2003-11-26       Impact factor: 5.157

8.  Histone methyltransferase MLL3 contributes to genome-scale circadian transcription.

Authors:  Utham K Valekunja; Rachel S Edgar; Malgorzata Oklejewicz; Gijsbertus T J van der Horst; John S O'Neill; Filippo Tamanini; Daniel J Turner; Akhilesh B Reddy
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-07       Impact factor: 11.205

9.  Circadian clock feedback cycle through NAMPT-mediated NAD+ biosynthesis.

Authors:  Kathryn Moynihan Ramsey; Jun Yoshino; Cynthia S Brace; Dana Abrassart; Yumiko Kobayashi; Biliana Marcheva; Hee-Kyung Hong; Jason L Chong; Ethan D Buhr; Choogon Lee; Joseph S Takahashi; Shin-Ichiro Imai; Joseph Bass
Journal:  Science       Date:  2009-03-19       Impact factor: 47.728

10.  Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles.

Authors:  Gwendal Le Martelot; Donatella Canella; Laura Symul; Eugenia Migliavacca; Federica Gilardi; Robin Liechti; Olivier Martin; Keith Harshman; Mauro Delorenzi; Béatrice Desvergne; Winship Herr; Bart Deplancke; Ueli Schibler; Jacques Rougemont; Nicolas Guex; Nouria Hernandez; Felix Naef
Journal:  PLoS Biol       Date:  2012-11-27       Impact factor: 8.029

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  5 in total

Review 1.  Dad's Snoring May Have Left Molecular Scars in Your DNA: the Emerging Role of Epigenetics in Sleep Disorders.

Authors:  Daniela Morales-Lara; Clelia De-la-Peña; Eric Murillo-Rodríguez
Journal:  Mol Neurobiol       Date:  2017-02-02       Impact factor: 5.590

Review 2.  Circadian Metabolomics in Time and Space.

Authors:  Kenneth A Dyar; Kristin L Eckel-Mahan
Journal:  Front Neurosci       Date:  2017-07-11       Impact factor: 4.677

3.  The social evolution of sleep: sex differences, intragenomic conflicts and clinical pathologies.

Authors:  Gonçalo S Faria; Susana A M Varela; Andy Gardner
Journal:  Proc Biol Sci       Date:  2019-01-16       Impact factor: 5.349

Review 4.  The Circadian Clock as an Essential Molecular Link Between Host Physiology and Microorganisms.

Authors:  Mari Murakami; Paola Tognini
Journal:  Front Cell Infect Microbiol       Date:  2020-01-22       Impact factor: 5.293

5.  Spatial Organization of the Gene Regulatory Program: An Information Theoretical Approach to Breast Cancer Transcriptomics.

Authors:  Guillermo de Anda-Jáuregui; Jesús Espinal-Enriquez; Enrique Hernández-Lemus
Journal:  Entropy (Basel)       Date:  2019-02-19       Impact factor: 2.524

  5 in total

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