Zhen-fang Shao1, Tong Li2, Jian-jun Jiang3, Jin-ming Lu4, Hong-wei Chen5. 1. Department of Entomology, South China Agricultural University, Tianhe, Guangzhou, Guangdong, 510642, China szf421128444@163.com. 2. Institute of Plant Protection, Henan Academy of Agricultural Science, Jinshui, Zhengzhou, Henan, 450002, China tongli84@hotmail.com. 3. Department of Entomology, South China Agricultural University, Tianhe, Guangzhou, Guangdong, 510642, China jiangjianjun8008@126.com. 4. Department of Entomology, South China Agricultural University, Tianhe, Guangzhou, Guangdong, 510642, China fabregas_l@hotmail.com. 5. Department of Entomology, South China Agricultural University, Tianhe, Guangzhou, Guangdong, 510642, China hongweic@scau.edu.cn.
Abstract
The relationships among six species of the Amiota taurusata Takada, Beppu, & Toda (Diptera: Drosophilidae) species group were investigated based on DNA sequence data of the mitochondrial NADH dehydrogenase subunit 2 ( ND2) gene, using three species of the genus Amiota as outgroups. A mitochondrial gene, cytochrome c oxidase I ( COI), can be used to discriminate between species of the taurusata group. Two new species are described from South China: A. protuberantis Shao et Chen, sp. nov. and A. shennongi Shao et Chen, sp. nov. A key to all the species of the taurusata group based on morphological characters is provided. This is an open access paper. We use the Creative Commons Attribution 3.0 license that permits unrestricted use, provided that the paper is properly attributed.
The relationships among six species of the Amiota taurusata Takada, Beppu, & Toda (Diptera: Drosophilidae) species group were investigated based on DNA sequence data of the mitochondrial NADH dehydrogenase subunit 2 ( ND2) gene, using three species of the genus Amiota as outgroups. A mitochondrial gene, cytochrome c oxidase I ( COI), can be used to discriminate between species of the taurusata group. Two new species are described from South China: A. protuberantis Shao et Chen, sp. nov. and A. shennongi Shao et Chen, sp. nov. A key to all the species of the taurusata group based on morphological characters is provided. This is an open access paper. We use the Creative Commons Attribution 3.0 license that permits unrestricted use, provided that the paper is properly attributed.
Entities:
Keywords:
East Asia; cryptic species; drosophilid; mtDNA; taxonomy
The
Amiota taurusata
Takada, Beppu, & Toda (Diptera: Drosophilidae) species group was established by
Chen and Toda (2001)
based on a phylogenetic analysis using 31 adult male morphological characters. Until now, eight species have been reported in this group from East Asia (
Chen and Toda 2001
;
Chen et al. 2004
, 2005;
Cao et al. 2008
):
A. aquilotaurusata
Takada et al
.
, 1979,
A. asymmetricaChen et Takamori, 2005
;
A. femorataChen et Takamori, 2005
,
A. sacculipes
Máca et Lin, 1993,
A. spinifemora
Li et Chen, 2008,
A. taurusata
Takada et al
.
, 1979,
A. vulnerablaChen et Zhang, 2004
, and
yixiangensisChen et Takamori, 2005
.
Chen and Toda (2001)
regarded the
taurusata
group as monophyletic on the basis of the hind femur basoventrally with a small, lobe-like flap (ch. 1;
Figure 2
D in
Chen and Toda 2001
); hind tibia apicodorsally much extended flap (ch. 2;
Figure 2
D in
Chen and Toda 2001
); hind first tarsomere dorsally expanded (ch. 3;
Figure 2
D in
Chen and Toda 2001
); fourth tergite laterally broadened and protruded more than others (ch. 4;
Figure 1
B in
Chen and Toda 2001
). However,
Chen et al. (2004
, 2005) and
Cao et al. (2008)
found that the ch. 2 and ch. 3 are usually absent in some species; these two characters have been eliminated from the diagnosis criteria of the
taurusata
group.
Figure 2.
Amiota shennongi
Shao et Chen,
sp. nov.
♂: (A) Epandrium (epand) and circus, lateral view; (B) surstylus (sur) and tenth sternite (st 10), ventral view; (C) hypandrium and gonopod, ventral view; (D, E) paramere(s), aedeagus, and aedeagal apodeme, ventral and lateral views. Scale bars: 0.1 mm. High quality figures are available online.
Figure 1.
Amiota protuberantis
Shao et Chen,
sp. nov.
♂: (A) Epandrium (epand) and circus (cerc), lateral view; (B) surstylus (sur) and tenth sternite (st 10), ventral view; (C) hypandrium and gonopod, ventral view; (D) paramere, aedeagus, and aedeagal apodeme, lateral view. Scale bars: 0.1 mm. High quality figures are available online.
Amiota shennongi
Shao et Chen,
sp. nov.
♂: (A) Epandrium (epand) and circus, lateral view; (B) surstylus (sur) and tenth sternite (st 10), ventral view; (C) hypandrium and gonopod, ventral view; (D, E) paramere(s), aedeagus, and aedeagal apodeme, ventral and lateral views. Scale bars: 0.1 mm. High quality figures are available online.Amiota protuberantis
Shao et Chen,
sp. nov.
♂: (A) Epandrium (epand) and circus (cerc), lateral view; (B) surstylus (sur) and tenth sternite (st 10), ventral view; (C) hypandrium and gonopod, ventral view; (D) paramere, aedeagus, and aedeagal apodeme, lateral view. Scale bars: 0.1 mm. High quality figures are available online.Recently, a molecular approach was used to uncover the relationship among the species in
Stegana
(
Li et al. 2010
;
Lu et al. 2011a
, b),
Phortica
(
He et al. 2009b
;
Cao et al. 2011
), and
Paraleucophenga
(
Zhao et al. 2009
), which are from genera of the subfamily Ste-ganinae. However, few related studies have been carried out in the genus
Amiota
.
Chen and Toda’s (2001)
phylogenetic analysis of the subgenus
Amiota
(currently the genus
Amiota
) included the three species of this group mentioned above, the
taurusata
group, which is closely related to the
apodemata
, the
nagatai
, and the
sinuata
groups, but the relationships within this group were not resolved at all. In the present study, two new species of the
taurusata
group from China are described, and the relationships among the four known and two new species were investigated based on the DNA sequences of the mitochondrial NADH dehydrogenase subunit 2 (
ND2
) gene. Barcoding information on the mitochondrial cytochrome
c
oxidase I (
COI
) genes of most of the species is provided.
Materials and Methods
Materials
All materials were collected from tree trunks or around human eyes and preserved in 75% ethanol. A small piece of tissue was removed from the fly abdomen and used for the DNA extraction. The body and terminalia were dried and deposited in the Department of Entomology, South China Agricultural University, Guangzhou, China (SCAU). The definitions of measurements, indices, and abbreviations follow
Zhang and Toda (1992)
and
Chen and Toda (2001)
.The information on the samples used in the molecular phylogenetic analyses is given in
Table 1
. Six species of the
taurusata
group were employed in the molecular phylogenetic analysis, and three
Amiota
species of the genus
Amiota
from the
apodemata
,
nagatai
, and
sinuata
groups were used as outgroups.
Table 1.
Data on samples for DNA sequencing and t he accession numbers of the
ND2
and
COI
sequences.
1)
He et al. 2009a
; 2)mistaken as EU431907 in
He et al. 2009a
.
Data on samples for DNA sequencing and t he accession numbers of the
ND2
and
COI
sequences.1)
He et al. 2009a
; 2)mistaken as EU431907 in
He et al. 2009a
.
Abbreviations
4c, third costal section between R2+3 and R4+5/M1 between r-m and dm-cu; 4v, M1 between dm-cu and wing margin/M1 between r-m and dm-cu; 5x, ac, third costal section between R2+3 and R4+5/fourth costal section; adf, longest dorsal branch of arista/width of first flagellomere; arb, dorsal branches/ventral branches of arista; avd, longest ventral branch/longest dorsal branch of arista in length; BL, body length; C, second costal section between subcostal break and R2+3/third costal section between R2+3 and R4+5; C3F, length of heavy setation in third costal section/length of the third costal section ch/o, maximum width of gena/maximum diameter of eye; CuA1 between dm-cu and wing margin/dm-cu between M1 and CuA1; dcl, anterior dorsocentral/posterior dorsocentral in length; dcp, length distance between ipsilateral dorsocentrals/cross distance between anterior dorsocentrals; flw, length/width of first flagellomere; FW/HW, frontal width/head width; M, CuA1 between dm-cu and wing margin/M1 between r-m and dm-cu; orbito, distance between proclinate and posterior reclinate orbitals/distance between inner vertical and posterior reclinate orbital; presctl, prescutellar/posterior dorsocentral in length; prorb, proclinate orbital/posterior reclinate orbital in length; rcorb, anterior reclinate orbital/posterior reclinate orbital in length; sctl, basal scutellar/apical scutellar in length; sctlp, distance between ipsilateral scutellars/cross distance between apical scutellars; sterno, anterior katepisternal/posterior katepisternal in length; THL, thorax length; vb, subvibrissal/vibrissa in length; WL, wing length; WW, wing width.
DNA Extraction and Sequencing
Total DNA was extracted using a DNA extraction Kit (TIANGEN,
www.tiangen.com
) according to the manufacturer’s protocol. The
ND2
and
COI
fragments were amplified with the primers listed in
Table 2
. The PCR reactions consisted of an initial 4 min pre-denaturation at 94°C, followed by 30 cycles (30 sec of denaturation at 94°C, 1 min of annealing at 54°C for
ND2
and at 49°C for
COI
, and 1 min of extension at 72°C), and a final elongation for 5 min at 72°C. When possible, purified amplified products were directly run on an ABI 3730 sequencer; otherwise, they were cloned into the pMD18-T vector (TAKARA,
www.takarabio.com
) and then sequenced. The related
ND2
sequences of
A. natagai
,
A. planate
, and
A. sinuata
were retrieved from the National Center for Biotechnology Information (NCBI).
Table 2.
Primers used for PCR and sequencing.
Primers used for PCR and sequencing.
Phylogenetic analyses
The sequences were aligned by the Clustal W (
Thompson et al. 1994
) method in MEGA 4.0 (
Tamura et al. 2007
) with the default options and then adjusted manually. Because the substitution saturation masked the phylogenetic signal (
Lopez et al. 1999
;
Philippe and Froterre 1999
), the method of
Xia et al. (2003)
was used to test the nucleotide substitution saturation in the program DAMBE 5.0.80 (
Xia and Xie 2001
). The base compositions of these sequences were investigated using PAUP* version 4.0b10 (
Swofford 2001
), and the c
2
test was used to evaluate the nucleotide composition homogeneity among them. Uncorrected
p
distance among taxa was estimated by MEGA 4.0 (
Tamura et al. 2007
).Phylogenetic relationships were constructed using the Bayesian inferring (BI) method in MrBayes 3.2.1 (
Huelsenbeck and Ronquist 2001
;
Ronquist and Huelsenbeck 2003
). In the BI analyses, the data were partitioned by locus (1 data partition) and codon positions (3 data partitions). The nucleotide substitution models of BI analyses were selected by Modeltest 3.7 using the hierarchical likelihood ratio test (hLRT) criterion (
Posada and Crandall 1998
). Two independent runs with 2,000,000 generations were implemented in parallel, and a sampling frequency of every 100 generations was employed. When the average deviation of split frequencies fell well below 0.01, the two runs were stopped. For each run, the 5,000 early-phase samples were discarded, and the remainder of the samples were used. A majority rule tree showing all the compatible partitions was obtained.
Nomenclature
This publication and the nomenclature it contains have been registered in ZooBank. The LSID number is: urn:lsid:zoobank.org:pub:60353BF6-3506-4286-A8E9-FB72847CD3D9. It can be found online by inserting the LSID number after
www.zoobank.org/
.
Results
Amiota taurusata
species group
Diagnosis
Hind femur with small, lobe-like flap basoventrally; fourth tergite laterally broadened and protruded more than others (modified from
Chen and Toda 2001
;
Figures 1B
,
2D
). In the new species described, only characters that depart from the universal description (given by
Chen and Toda (2001)
and
Chen et al. (2004
, 2005) for the subgenus
Amiota
) are provided for brevity.Amiota protuberantis
Shao et Chen, sp. nov.(
Figure 1
)This species very similar to
A
.
femorataChen et Takamori, 2005
in hind tibia distinctly expanded on subapical part of dorsal surface; aedeagus bifurcated on basal 1/2, submedially slightly curved dorsad, separated from parameres in lateral view (
Figure 1
D).
Description
Only important characters are given. Male and female: Frons, face, and clypeus nearly black. Ventral branches of arista distinctly shorter than 1/3 of dorsals in male, slightly shorter than 1/2 of dorsals in female. Palpus brown. Legs yellow except for dark brown on all femora in female or dark brown on femora of fore-and midlegs and distal half of hind femur in male. Male hindleg apicodorsally much extended like flap on tibia and dorsally slightly expanded on first tarsomere. Epandrium small, constricted more than 1/2 width mid-dorsally, with ca. 17 setae near posterior to ventral margins on each side (
Figure 1
A). Surstylus distally with numerous setae on outer surface and ca. 7 prensisetae (
Figure 1
B). Vertical lobe of gonopod apically round, without any processes. Parameres fused on basal 3/4, slightly sclerotized, as long as aedeagus, with ca. 9 sensilla subbasally (
Figure 1
C, D).
Measurements
BL = 3.08 mm in the holotype (range in 3
♂
and 2
♀
paratypes: 2.60–3.16 mm in
♂
, 3.32– 3.40 mm in
♀
), THL = 1.76 mm (1.56–1.72 mm in
♂
, 1.60–1.64 mm in
♀
), WL = 2.60 mm (2.24–2.60 mm in
♂
, 2.80–2.88 mm in
♀
), WW = 1.20 mm (1.00–1.20 mm in
♂
, 1.20– 1.32 mm in
♀
, arb = 6/4 (6/4–5), avd = 0.33 (0.33–0.57), adf = 1.00 (0.88–1.17), flw = 1.83 (1.50–2.00), FW/HW = 0.39 (0.36–0.44), ch/o = 0.08 (0.08–0.10), prorb = 0.94 (0.69– 1.00), rcorb = 0.50 (0.50–0.85), vb = 0.57 (0.57–0.63), dc1 = damaged, presct1 = 0.44 (0.44–0.60), sct1 = 1.20 (1.20–1.26), sterno = 0.78 (0.60–0.95), orbito = 1.00 (1.00–1.40), dcp = 0.38 (0.30–0.41), sct1p = 0.92 (0.72– 1.33), C = 2.05 (1.83–3.08), 4c = 1.73 (0.93– 1.78), 4v = 3.00 (2.50–3.00), 5x = 1.33 (1.16– 2.00), ac = 3.25 (3.25–5.33), M = 0.64 (0.50– 0.77), and C3F = 0.78 (0.78–0.83).
Types
Holotype
♂
(SCAU, No. 121088), CHINA: Mt. Wuliang, Jingdong, Yunnan, 18°41’N, 108°52’E, altitude 2200 m a.s.l., 4.viii.2006, T Li. Paratypes: 3
♂
, 2
♀
(SCAU, No. 121089– 93), same data as the holotype.
Etymology
From the Latin word protuberantis, referring to the hindleg tibia expanded on subapical part of dorsoposterior surface.
Distribution
China (Yunnan).Amiota shennongi
Shao et Chen, sp. nov. (
Figure 2
)This species very similar to
A
.
aquilotaurusata
Takada, Beppu et Toda, 1979 in that it has the same shape of the male terminalia. It differs by having the short process of aedeagus longer than 1/2 of long one (
Figure 2
D, E), the paramere thick rod-like, not expanded (
Figure 1
D, E).Only important characters are given in here. Male: Frons, face, and clypeus nearly dark brown. Ventral branches of arista distinctly shorter than 1/3 of dorsals in male. Palpus brownish yellow. Legs entirely yellow; hind leg: tibia apicodorsally much extended flap, and first tarsomere dorsally expanded (
Chen and Toda 2001
;
Figure 2
D). Epandrium entirely separated into two lateral lobes, with about 15 setae near posterior to ventral margins per site (
Figure 2
A). Surstylus lacking pubescence, with finger-like process at posteroventral corner, and about nine prensisetae on distal margin (
Figure 2
B). Tenth sternite deeply constricted mid-ventrally, but not separated, entirely fused to surstyli laterally (
Figure 2
B). Anterior portion of hypandrium slightly broadened (
Figure 2
C). Aedeagus basally fused to paramere and deeply bifurcated, two processes of aedeagus nearly equilong (
Figure 2
D, E). Parameres slightly longer than aedeagus, round apically and expanded basally (
Figure 2
D, E).BL = 2.88 mm in the holotype (3.00 mm in 1♂paratype), THL = 1.16 mm (1.27 mm), WL = 2.14 mm (2.44 mm), WW = 0.96 mm (1.24 mm), arb = 7/5 (5/4), avd = 0.29 (0.33), adf = 1.40 (1.20), flw = 2.40 (2.00), FW/HW = 0.46 (0.38), ch/o = 0.34 (0.24), prorb = 1.08 (0.87), rcorb = 0.75 (0.66), vb = 0.43 (0.50), dc1 = damaged (0.6), presct1 = 0.28(0.50), sct1 = 1.23 (1.09), sterno = 1.50 (0.75), orbito = 1.40 (3.30), dcp = 0.32 (0.36), sct1p = 1.33 (1.33), C = 2.57 (1.67), 4c = 1.27 (2.10), 4v = 3.55 (3.40), 5x = 0.63 (0.75), ac = 3.50 (5.25), M = 0.80 (0.80), and C3F = 0.63 (0.59).Holotype
♂
(SCAU, No. 121094), CHINA: Dajiuhu, Shennongjia, Hubei, 31°29’N, 110°18’E, altitude 1400 m a.s.l., 31.vii.2004, HW Chen. Paratype: 1
♂
(SCAU, No. 121095), same data as holotype.Patronym, the name of Yandi, who was a man in an old Chinese story.China (Hubei).
Key to species of the
taurusata
group
1. Hind femur ventro-basally with nearly hyaline, small, lobe-like flap; fourth tergite laterally broadened and protruded more than others (the
taurusata
group). ………………………………………......2 Hind femur without any flap; fourth tergite neither broadened nor protruded more than others….............other
Amiota
species2. Ventral branches of arista distinctly shorter than 1/2 of dorsals; all femora dark brown to black……………………….…...…….3 Ventral branches of arista as long as 1/2 of dorsals; all legs yellow….........................53. Hind first tarsomere not expanded dorsally………………………………….4 Hind first tarsomere expanded dorsally………..
A. sacculipes
Máca et Lin4. Vertical lobe of gonopod nearly triangular; aedeagus basally with 1 pair of slender processes…
A. femorata
Chen et Takamori Vertical lobe of gonopod nearly quadrate; aedeagus without any processes…………. …..
A. protuberantis
Shao et Chen, sp. nov.5. Hind tibia apicodorsally much extended like flap; hind first tarsomere expanded dorsally….................................................6 Hind tibia apicodorsally not extended like flap; hind first tarsomere not expanded dorsally………………………………….86. Short process of aedeagus shorter than 1/5 of long one……………………………….. ……..
A. taurusata
Takada, Beppu et Toda Short process of aedeagus slightly shorter or longer than 1/2 of long one..……….........77. Short process of aedeagus shorter than 1/2 of long one; paramere expanded to lobe-like…..
A. shennong
i Shao et Chen, sp. nov. Short process of aedeagus longer than 1/2 of long one; paramere expanded to lobe-like..
………....A. aquilotaurusata
Takada, Beppu et Toda8.Parameres nearly entirely sclerotized; gonopod nearly triangular………………...
………...A. asymmetrica
Chen et Takamori Paramereswith membranaceous part; gonopod nearly quadrate………………...99. Paramere entirely separated from aedeagus..
……………A. yixiangna
Chen et Takamori Paramere basally fused to aedeagus………... ……………
A
.
vulnerabla
Chen et Zhang
Molecular analysis
Data set analysisThe alignment of the sequences included 1026 base pairs for
ND2
and 684 for
COI.
There were end gaps in the
ND2
sequences of
A. spinifemorata
–GZ (sites 1–36),
A. spinifemorata
–YN2 (sites 1015–1026), and
A. shennongi
sp. nov. (sites 1015–1026). End gaps also existed in the
ND2
sequences (sites 149–151) of
A. femorata
–HN,
A. femorata
– SC2,
A. femorata
–SX,
A. femorata
–YN2, and
A. protuberantis
sp. nov.–YN2 as well as in the
ND2
sequences (sites 148–150) of
A. femorata
–SC1,
A. femorata
–YN2,
A. femorata
–XZ, and
A. protuberantis
sp. nov.–YN2. The
COI
sequences of some samples (
A. aquilotaurusata
,
A. asymmetrica
–YN2, and
A. femorata
–HN) were not acquired, and end gaps existed in the
COI
sequences (sites 1–15) of
A. plannata.
There were 349 variable sites (of which 211 were parsimony informative sites) for
ND2
and 178 variable sites (of which 106 were parsimony informative sites) for
COI.
The nucleotide composition of
ND2
is shown in
Table 3
. The sequences contained much higher AT content (82.8%) than GC content, especially at the third codon positions (95.4%). The c
2
test revealed that the nucleotide composition among the taxa was not het-heterogeneous.
Table 3.
Results of nucleotide composition and composition homogeneity test.
Regardless of whether the analysis was performed with the combined or separated codon position data for
ND2
, the test of substitution saturation revealed that the observed substitution saturation index (
Iss
) was significantly lower than the corresponding critical substitution saturation index (
Iss.c
) for both the symmetrical and asymmetrical trees, indicating that there was little saturation in these sequences (
Table 4
).
Table 4.
Results of substitution saturation tests and model selection.
Index of substitution saturation assuming a symmetrical true tree.
Probability of a significant difference between
Iss
and
Iss.cSym
(two-tailed test).
Index of substitution saturation assuming an asymmetrical true tree.
Probability of a significant difference between
Iss
and
Iss.cAsym
(two-tailed test).
Results of nucleotide composition and composition homogeneity test.Results of substitution saturation tests and model selection.Index of substitution saturation assuming a symmetrical true tree.Probability of a significant difference between
Iss
and
Iss.cSym
(two-tailed test).Index of substitution saturation assuming an asymmetrical true tree.Probability of a significant difference between
Iss
and
Iss.cAsym
(two-tailed test).Table 5
shows the uncorrected pairwise divergence for the
ND2
and
COI
sequences in the
taurusata
group, excluding the p-distance for
COI
of
A. aquilotaurusata
,
A. asymmetrica
–YN1, and
A. femorata
–HN. The interspecific genetic divergence for
ND2
in the
taurusata
group ranged from 0.0294 (
A. femorata
vs.
A. protuberantis
sp. nov.) to 0.1049 (
A. aquilotaurusata
vs.
A. spinifemorata
), and for
CO1
it ranged from 0.0207 (
A. femorata
vs.
A. protuberantis
sp. nov.) to 0.0841 (
A. asymmetrica
vs.
A. protuberantis
sp. nov.). The intraspecific genetic divergences for
ND2
and
COI
were calculated for
A. asymmetrica
(0.0021 for
ND2
),
A. protuberantis
sp. nov. (0.0072 for
ND2
, 0.0015 for
COI
),
A. spinifemorata
(0.0041 to 0.0185 for
ND2
, 0.0073 to 0.0088 for
COI
), and
A. femorata
(0.0010 to 0.0474 for
ND2
, 0.0000 to 0.0336 for
COI
).
Table 5.
Uncorrected pairwise p-distance among the
ND2
and
COI
sequences of the
taurusata
species group. The matrix in the lower left shows the uncorrected pairwise p-distance among the
ND2
sequences; the matrix in the upper right shows the uncorrected pairwise pdistance among the
COI
sequences.
Uncorrected pairwise p-distance among the
ND2
and
COI
sequences of the
taurusata
species group. The matrix in the lower left shows the uncorrected pairwise p-distance among the
ND2
sequences; the matrix in the upper right shows the uncorrected pairwise pdistance among the
COI
sequences.
Phylogenetic analysis
The Bayesian tree for
ND2
lent good support for the monophyly of the
taurusata
group with respect to the outgroups (posterior probabilities (PP) = 0.99) (
Figure 3
). Samples from different geographical areas of
A. protuberantis
,
A. asymmetrica
, and
A. spinifemorata
clustered as a monophyletic lineage, while samples of
A. femorata
were rendered paraphyletic with respect to
A. protuberantis
.
A. spinifemorata
first diverged in the
taurusata
group and was then followed by
A. asymmetrica
. The other four species grouped into a robust supported group (PP = 1.00).
A
.
shennongi
sp. nov. and
A
.
aquilotaurusata
showed a sibling relationship (PP = 1.00) in agreement with their high similarity in morphological characters. Samples of
A. femorata
diverged into two highly supported clusters. One consisted of
A. femorata
(HN, SC1, SX, and XZ) (PP = 0.98); the other consisted of
A. femorata
(SC2 and YN1–2) (PP = 1.00) and clustered with
A. protuberantis
sp. nov. (PP = 1.00).
Figure 3.
Bayesian tree of the
taurusata
group deduced from the
ND2
sequences using the site-specific mode numbers. These numbers are beside the nodes and are the posterior probabilities. High quality figures are available online.
Bayesian tree of the
taurusata
group deduced from the
ND2
sequences using the site-specific mode numbers. These numbers are beside the nodes and are the posterior probabilities. High quality figures are available online.
Discussion
A phylogenetic tree of the
taurusata
group was constructed using mitochondrial
ND2
sequences. As negative results were obtained in the tests of nucleotide composition heterogeneity and substitution saturation, the conclusions of the phylogenetic analyses should be accepted. The monophyly of the
taurusata
group was strongly supported in the molecular phylogenetic analyses, and the relationships within this group were almost resolved. However, the unstable position of
A. asymmetrica and A. spinifemorata
was not resolved, even when using a site-specific model for Bayesian inference. To fully resolve the phylogenetic relationship in the
taurusata
group, multiple loci or more species in the analyses are necessary.The
ND2
divergence matrix was provided for the
taurusata
group. The interspecific genetic divergence in the
taurusata
group ranged from 0.0294 to 0.1049, and the intraspecific genetic divergence ranged from 0.0010 to 0.0474. The geographical samples of
A. asymmetrica
,
A. protuberantis
sp. nov., and
A. spinifemorata
formed highly-supported monophyletic groups in the phylogenetic tree, and intraspecific genetic divergence within them was much less than interspecific genetic divergence in the
taurusata
group. In addition, no diagnostic morphological character was found to distinguish the geographical samples of these species, indicating that they should be considered conspecific. However,
A. femorata
diverged into two clusters, and classified characters in its morphology were missing. The three haplotypes of
A. femorata
, i.e., SC2, YN1, and YN2, clustered with
A. protuberantis
sp. nov. This relationship could be attributed to stochastic lineage sorting and/or hybridization. The genetic divergence for
ND2
within the two clusters ranged from 0.0010 to 0.0474, and the mean divergence between them was 0.0392. Assuming the observed divergence range (0.0294 to 0.1049) reflects the real intraspecific variations in the
taurusata
group, there likely are cryptic species in
A. femorata
samples.Recent work suggests that cytochrome c oxidase I (
COI
) might serve as a DNA barcode for the identification of animal species (
Brown et al. 2003
; Foster et al. 2004;
Barrett and Hebert 2005
;
Cardoso and Vogler 2005
; Hogg and Hebert 2005; Monaghan et al. 2005;
Vences et al. 2005
;
Ward et al. 2005
). This gene region is easily recovered and provides good resolution, as evidenced by the deep sequence divergences among 13,000 closely related pairs of animal species (Hebert et al. 2003b). In this study, a 684 bp region of
COI
was acquired, and it showed that
COI
differences between most of the species far exceeded those within species. The interspecific genetic divergence in the
taurusata
group ranged from 0.0207 to 0.0841, and the intraspecific genetic divergence ranged from 0.0000 to 0.0336. An overlapping area existed between the intraspecific and interspecific genetic divergence. The intraspecific genetic divergences within
A. protuberantis
sp. nov. (0.0015) and
A. spinifemorata
(0.0073 to 0.0088) were much lower than the minimum interspecific genetic divergence (0.0207) and the mean intraspecific variability for Diptera (1.3 ± 1.6%) (
Meier 2008
), indicating that they should be considered conspecific. This result is consistent with the
ND2
result and the morphology analysis. The observed divergence of the two clusters of
A. femorata
was 0.0322, which is greater than the minimum interspecific genetic divergence but lower than the minimum interspecific genetic divergence for Diptera (5.9 ± 4.1%) (
Meier 2008
).
A. protuberantis
sp. nov. was identified as the sister-species of
A. femorata
, and the p-distance ranged from 0.0146 to 0.0263. Because of the limit coming from the number and distribution of samples, there likely are cryptic species in the two clusters, which is consistent with the
ND2
result. It is important to include samples from a wider geographical range in future studies to determine if the two clusters represent morphologically cryptic species. Further samples are also needed for an evaluation of the morphological variability revealed in the results.
Biogeographical implications
All the members of
A. spinifemorata
and
A. asymmetrica
were found in southwestern China. According to the phylogenetic analyses, the two species diverged from the
taurusata
group prior to
A. shennongi
sp. nov. and
A. aquilotaurusata
, which were found in central and northeast China. It may indicate that the founder of the
taurusata
group arose in southwestern China, undergoing some differentiation before the expansion into the central and northern areas. In the zones of low and high elevation,
A. femorata
can be distributed between one cluster (
A. femorata
–HN, SC1, SX, excluding
A. femorata
–XZ) mainly at low elevations (ca. 300–500 m a.s.l.) and another cluster (
A. femorata
–SC2, YN1, and YN2) at high elevations (ca. 1700–2700 m a.s.l.) that clusters with
A. protuberantis
sp. nov. This result may indicate that some individuals underwent heteromorphosis to different extents following the expansion of
A. femorata
from low elevations into high elevations, and that then
A. protuberantis
sp. nov. was found.
Authors: Robert D Ward; Tyler S Zemlak; Bronwyn H Innes; Peter R Last; Paul D N Hebert Journal: Philos Trans R Soc Lond B Biol Sci Date: 2005-10-29 Impact factor: 6.237