Literature DB >> 25372308

An expanding universe of mRNA modifications.

Samie R Jaffrey1.   

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Year:  2014        PMID： 25372308      PMCID： PMC4384663          DOI： 10.1038/nsmb.2911

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN： 1545-9985            Impact factor:   15.369


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  22 in total

Review 1.  RNomics: identification and function of small, non-messenger RNAs.

Authors:  Alexander Hüttenhofer; Jürgen Brosius; Jean Pierre Bachellerie
Journal:  Curr Opin Chem Biol       Date:  2002-12       Impact factor: 8.822

2.  Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA.

Authors:  M S Paul; B L Bass
Journal:  EMBO J       Date:  1998-02-16       Impact factor: 11.598

3.  Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization.

Authors:  J Cavaillé; K Buiting; M Kiefmann; M Lalande; C I Brannan; B Horsthemke; J P Bachellerie; J Brosius; A Hüttenhofer
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

4.  X-linked dyskeratosis congenita is caused by mutations in a highly conserved gene with putative nucleolar functions.

Authors:  N S Heiss; S W Knight; T J Vulliamy; S M Klauck; S Wiemann; P J Mason; A Poustka; I Dokal
Journal:  Nat Genet       Date:  1998-05       Impact factor: 38.330

5.  Identification of methylated nucleosides in messenger RNA from Novikoff hepatoma cells.

Authors:  R Desrosiers; K Friderici; F Rottman
Journal:  Proc Natl Acad Sci U S A       Date:  1974-10       Impact factor: 11.205

6.  28S rRNA is inducibly pseudouridylated by the mTOR pathway translational control in CHO cell cultures.

Authors:  Franck C Courtes; Chen Gu; Niki S C Wong; Peter C Dedon; Miranda G S Yap; Dong-Yup Lee
Journal:  J Biotechnol       Date:  2014-01-27       Impact factor: 3.307

7.  Missense mutation in pseudouridine synthase 1 (PUS1) causes mitochondrial myopathy and sideroblastic anemia (MLASA).

Authors:  Yelena Bykhovskaya; Kari Casas; Emebet Mengesha; Aida Inbal; Nathan Fischel-Ghodsian
Journal:  Am J Hum Genet       Date:  2004-04-22       Impact factor: 11.025

8.  Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA.

Authors:  Schraga Schwartz; Douglas A Bernstein; Maxwell R Mumbach; Marko Jovanovic; Rebecca H Herbst; Brian X León-Ricardo; Jesse M Engreitz; Mitchell Guttman; Rahul Satija; Eric S Lander; Gerald Fink; Aviv Regev
Journal:  Cell       Date:  2014-09-11       Impact factor: 41.582

9.  Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique.

Authors:  A Bakin; J Ofengand
Journal:  Biochemistry       Date:  1993-09-21       Impact factor: 3.162

10.  Identification of direct targets and modified bases of RNA cytosine methyltransferases.

Authors:  Vahid Khoddami; Bradley R Cairns
Journal:  Nat Biotechnol       Date:  2013-04-21       Impact factor: 54.908
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  15 in total

1.  Structural Elucidation of Bisulfite Adducts to Pseudouridine That Result in Deletion Signatures during Reverse Transcription of RNA.

Authors:  Aaron M Fleming; Anton Alenko; Jay P Kitt; Anita M Orendt; Peter F Flynn; Joel M Harris; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2019-10-02       Impact factor: 15.419

2.  Fluorescent RNA Aptamers as a Tool to Study RNA-Modifying Enzymes.

Authors:  Nina Svensen; Samie R Jaffrey
Journal:  Cell Chem Biol       Date:  2016-02-11       Impact factor: 8.116

3.  Collateral Damage Occurs When Using Photosensitizer Probes to Detect or Modulate Nucleic Acid Modifications.

Authors:  Aaron M Fleming; Michael B Chabot; Ngoc L B Nguyen; Cynthia J Burrows
Journal:  Angew Chem Int Ed Engl       Date:  2021-12-29       Impact factor: 15.336

Review 4.  Probing the mechanisms underlying human diseases in making ribosomes.

Authors:  Katherine I Farley; Susan J Baserga
Journal:  Biochem Soc Trans       Date:  2016-08-15       Impact factor: 5.407

5.  HNRNPA2B1 Is a Mediator of m(6)A-Dependent Nuclear RNA Processing Events.

Authors:  Claudio R Alarcón; Hani Goodarzi; Hyeseung Lee; Xuhang Liu; Saeed Tavazoie; Sohail F Tavazoie
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

Review 6.  Advances in analyzing RNA diversity in eukaryotic transcriptomes: peering through the Omics lens.

Authors:  Sushant Bangru; Auinash Kalsotra
Journal:  F1000Res       Date:  2016-11-14

7.  RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data.

Authors:  Jia-Jia Xuan; Wen-Ju Sun; Peng-Hui Lin; Ke-Ren Zhou; Shun Liu; Ling-Ling Zheng; Liang-Hu Qu; Jian-Hua Yang
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

8.  Uridine Depletion and Chemical Modification Increase Cas9 mRNA Activity and Reduce Immunogenicity without HPLC Purification.

Authors:  Sriram Vaidyanathan; Krist T Azizian; A K M Ashiqul Haque; Jordana M Henderson; Ayal Hendel; Sabrina Shore; Justin S Antony; Richard I Hogrefe; Michael S D Kormann; Matthew H Porteus; Anton P McCaffrey
Journal:  Mol Ther Nucleic Acids       Date:  2018-06-30       Impact factor: 8.886

9.  The Cardiomyocyte RNA-Binding Proteome: Links to Intermediary Metabolism and Heart Disease.

Authors:  Yalin Liao; Alfredo Castello; Bernd Fischer; Stefan Leicht; Sophia Föehr; Christian K Frese; Chikako Ragan; Sebastian Kurscheid; Eloisa Pagler; Hao Yang; Jeroen Krijgsveld; Matthias W Hentze; Thomas Preiss
Journal:  Cell Rep       Date:  2016-07-21       Impact factor: 9.423

10.  RNAs Containing Modified Nucleotides Fail To Trigger RIG-I Conformational Changes for Innate Immune Signaling.

Authors:  Ann Fiegen Durbin; Chen Wang; Joseph Marcotrigiano; Lee Gehrke
Journal:  mBio       Date:  2016-09-20       Impact factor: 7.867
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