Literature DB >> 25367125

Pseudouridine in a new era of RNA modifications.

Boxuan Simen Zhao1, Chuan He1.   

Abstract

Two articles recently published in Nature and Cell report the first transcriptome-wide maps of pseudouridine (Ψ) at single-base resolution through selective chemical labeling, suggesting new mechanisms and functions of Ψ in mRNA and non-coding RNA molecules.

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Year:  2014        PMID： 25367125      PMCID： PMC4650566          DOI： 10.1038/cr.2014.143

Source DB:  PubMed          Journal:  Cell Res        ISSN： 1001-0602            Impact factor:   25.617


  11 in total

Review 1.  Pseudouridine in RNA: what, where, how, and why.

Authors:  M Charette; M W Gray
Journal:  IUBMB Life       Date:  2000-05       Impact factor: 3.885

2.  Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.

Authors:  Kate D Meyer; Yogesh Saletore; Paul Zumbo; Olivier Elemento; Christopher E Mason; Samie R Jaffrey
Journal:  Cell       Date:  2012-05-17       Impact factor: 41.582

3.  Mapping pseudouridines in RNA molecules.

Authors:  J Ofengand; M Del Campo; Y Kaya
Journal:  Methods       Date:  2001-11       Impact factor: 3.608

Review 4.  RNA pseudouridylation: new insights into an old modification.

Authors:  Junhui Ge; Yi-Tao Yu
Journal:  Trends Biochem Sci       Date:  2013-02-04       Impact factor: 13.807

5.  Increased erythropoiesis in mice injected with submicrogram quantities of pseudouridine-containing mRNA encoding erythropoietin.

Authors:  Katalin Karikó; Hiromi Muramatsu; Jason M Keller; Drew Weissman
Journal:  Mol Ther       Date:  2012-02-14       Impact factor: 11.454

6.  Converting nonsense codons into sense codons by targeted pseudouridylation.

Authors:  John Karijolich; Yi-Tao Yu
Journal:  Nature       Date:  2011-06-15       Impact factor: 49.962

7.  N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO.

Authors:  Guifang Jia; Ye Fu; Xu Zhao; Qing Dai; Guanqun Zheng; Ying Yang; Chengqi Yi; Tomas Lindahl; Tao Pan; Yun-Gui Yang; Chuan He
Journal:  Nat Chem Biol       Date:  2011-10-16       Impact factor: 15.040

8.  N6-methyladenosine-dependent regulation of messenger RNA stability.

Authors:  Xiao Wang; Zhike Lu; Adrian Gomez; Gary C Hon; Yanan Yue; Dali Han; Ye Fu; Marc Parisien; Qing Dai; Guifang Jia; Bing Ren; Tao Pan; Chuan He
Journal:  Nature       Date:  2013-11-27       Impact factor: 49.962

9.  Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells.

Authors:  Thomas M Carlile; Maria F Rojas-Duran; Boris Zinshteyn; Hakyung Shin; Kristen M Bartoli; Wendy V Gilbert
Journal:  Nature       Date:  2014-09-05       Impact factor: 49.962

10.  Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq.

Authors:  Dan Dominissini; Sharon Moshitch-Moshkovitz; Schraga Schwartz; Mali Salmon-Divon; Lior Ungar; Sivan Osenberg; Karen Cesarkas; Jasmine Jacob-Hirsch; Ninette Amariglio; Martin Kupiec; Rotem Sorek; Gideon Rechavi
Journal:  Nature       Date:  2012-04-29       Impact factor: 49.962
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  27 in total

1.  Blind tests of RNA nearest-neighbor energy prediction.

Authors:  Fang-Chieh Chou; Wipapat Kladwang; Kalli Kappel; Rhiju Das
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-08       Impact factor: 11.205

2.  Pseudouridines have context-dependent mutation and stop rates in high-throughput sequencing.

Authors:  Katherine I Zhou; Wesley C Clark; David W Pan; Matthew J Eckwahl; Qing Dai; Tao Pan
Journal:  RNA Biol       Date:  2018-05-11       Impact factor: 4.652

Review 3.  Epitranscriptomic Code and Its Alterations in Human Disease.

Authors:  Rajashekar Varma Kadumuri; Sarath Chandra Janga
Journal:  Trends Mol Med       Date:  2018-08-14       Impact factor: 11.951

Review 4.  The Importance of Being Modified: The Role of RNA Modifications in Translational Fidelity.

Authors:  Paul F Agris; Amithi Narendran; Kathryn Sarachan; Ville Y P Väre; Emily Eruysal
Journal:  Enzymes       Date:  2017-04-22

Review 5.  Role of RNA modifications in brain and behavior.

Authors:  Y Jung; D Goldman
Journal:  Genes Brain Behav       Date:  2018-03       Impact factor: 3.449

Review 6.  The RNA Epitranscriptome of DNA Viruses.

Authors:  Brandon Tan; Shou-Jiang Gao
Journal:  J Virol       Date:  2018-10-29       Impact factor: 5.103

7.  Exposure to DMSO during infancy alters neurochemistry, social interactions, and brain morphology in long-evans rats.

Authors:  Zachary Rabow; Taryn Morningstar; Megan Showalter; Hailey Heil; Krista Thongphanh; Sili Fan; Joanne Chan; Verónica Martínez-Cerdeño; Robert Berman; David Zagzag; Evgeny Nudler; Oliver Fiehn; Mirna Lechpammer
Journal:  Brain Behav       Date:  2021-04-10       Impact factor: 2.708

Review 8.  Post-transcriptional diversity in riboproteins and RNAs in aging and cancer.

Authors:  Jurandir Cruz; Bernardo Lemos
Journal:  Semin Cancer Biol       Date:  2021-08-30       Impact factor: 15.707

Review 9.  Elucidating the Functions of Non-Coding RNAs from the Perspective of RNA Modifications.

Authors:  Venkata Naga Srikanth Garikipati; Shizuka Uchida
Journal:  Noncoding RNA       Date:  2021-05-11

Review 10.  Long Non-Coding RNA Epigenetics.

Authors:  Marek Kazimierczyk; Jan Wrzesinski
Journal:  Int J Mol Sci       Date:  2021-06-07       Impact factor: 5.923
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