Literature DB >> 25359266

Modern and simple construction of plasmid: saving time and cost.

Hideki Nakayama1, Nobuo Shimamoto.   

Abstract

Construction of plasmids has been occupying a significant fraction of laboratory work in most fields of experimental biology. Tremendous effort was made to improve the traditional method for constructing plasmids, in which DNA fragments digested with restriction enzymes were ligated. However, the traditional method remained to be a standard protocol more than 40 years. At last, several recent inventions are rapidly and completely replacing the traditional method, because they are far quicker with less cost, and requiring less material. We here introduce three such methods that cover up most of the cases. Moreover, they are complementary with each other. Our lab protocols are provided for "no strain, no pain" construction of plasmids.

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Year:  2014        PMID: 25359266     DOI: 10.1007/s12275-014-4501-6

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  31 in total

1.  Transformation of yeast with synthetic oligonucleotides.

Authors:  R P Moerschell; S Tsunasawa; F Sherman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-01       Impact factor: 11.205

Review 2.  Recombineering: genetic engineering in bacteria using homologous recombination.

Authors:  Lynn C Thomason; James A Sawitzke; Xintian Li; Nina Costantino; Donald L Court
Journal:  Curr Protoc Mol Biol       Date:  2014-04-14

3.  Precise manipulation of chromosomes in vivo enables genome-wide codon replacement.

Authors:  Farren J Isaacs; Peter A Carr; Harris H Wang; Marc J Lajoie; Bram Sterling; Laurens Kraal; Andrew C Tolonen; Tara A Gianoulis; Daniel B Goodman; Nikos B Reppas; Christopher J Emig; Duhee Bang; Samuel J Hwang; Michael C Jewett; Joseph M Jacobson; George M Church
Journal:  Science       Date:  2011-07-15       Impact factor: 47.728

Review 4.  Novel methods for cloning and engineering genes using the polymerase chain reaction.

Authors:  A Rashtchian
Journal:  Curr Opin Biotechnol       Date:  1995-02       Impact factor: 9.740

5.  A TALE nuclease architecture for efficient genome editing.

Authors:  Jeffrey C Miller; Siyuan Tan; Guijuan Qiao; Kyle A Barlow; Jianbin Wang; Danny F Xia; Xiangdong Meng; David E Paschon; Elo Leung; Sarah J Hinkley; Gladys P Dulay; Kevin L Hua; Irina Ankoudinova; Gregory J Cost; Fyodor D Urnov; H Steve Zhang; Michael C Holmes; Lei Zhang; Philip D Gregory; Edward J Rebar
Journal:  Nat Biotechnol       Date:  2010-12-22       Impact factor: 54.908

6.  A new logic for DNA engineering using recombination in Escherichia coli.

Authors:  Y Zhang; F Buchholz; J P Muyrers; A F Stewart
Journal:  Nat Genet       Date:  1998-10       Impact factor: 38.330

7.  Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome.

Authors:  Daniel G Gibson; Gwynedd A Benders; Cynthia Andrews-Pfannkoch; Evgeniya A Denisova; Holly Baden-Tillson; Jayshree Zaveri; Timothy B Stockwell; Anushka Brownley; David W Thomas; Mikkel A Algire; Chuck Merryman; Lei Young; Vladimir N Noskov; John I Glass; J Craig Venter; Clyde A Hutchison; Hamilton O Smith
Journal:  Science       Date:  2008-01-24       Impact factor: 47.728

8.  Programming cells by multiplex genome engineering and accelerated evolution.

Authors:  Harris H Wang; Farren J Isaacs; Peter A Carr; Zachary Z Sun; George Xu; Craig R Forest; George M Church
Journal:  Nature       Date:  2009-07-26       Impact factor: 49.962

9.  Genetic engineering of human pluripotent cells using TALE nucleases.

Authors:  Dirk Hockemeyer; Haoyi Wang; Samira Kiani; Christine S Lai; Qing Gao; John P Cassady; Gregory J Cost; Lei Zhang; Yolanda Santiago; Jeffrey C Miller; Bryan Zeitler; Jennifer M Cherone; Xiangdong Meng; Sarah J Hinkley; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; Rudolf Jaenisch
Journal:  Nat Biotechnol       Date:  2011-07-07       Impact factor: 54.908

10.  A simple and effective method for construction of Escherichia coli strains proficient for genome engineering.

Authors:  Young Shin Ryu; Rajesh Kumar Biswas; Kwangsu Shin; Vinuselvi Parisutham; Suk Min Kim; Sung Kuk Lee
Journal:  PLoS One       Date:  2014-04-18       Impact factor: 3.240

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  4 in total

1.  Design of Heteronuclear Metalloenzymes.

Authors:  A Bhagi-Damodaran; P Hosseinzadeh; E Mirts; J Reed; I D Petrik; Y Lu
Journal:  Methods Enzymol       Date:  2016-07-26       Impact factor: 1.600

2.  Generation of BiKEs and TriKEs to Improve NK Cell-Mediated Targeting of Tumor Cells.

Authors:  Martin Felices; Todd R Lenvik; Zachary B Davis; Jeffrey S Miller; Daniel A Vallera
Journal:  Methods Mol Biol       Date:  2016

Review 3.  Natural killer cells unleashed: Checkpoint receptor blockade and BiKE/TriKE utilization in NK-mediated anti-tumor immunotherapy.

Authors:  Zachary B Davis; Daniel A Vallera; Jeffrey S Miller; Martin Felices
Journal:  Semin Immunol       Date:  2017-09-05       Impact factor: 11.130

4.  In vivo Assembly in Escherichia coli of Transformation Vectors for Plastid Genome Engineering.

Authors:  Yuyong Wu; Lili You; Shengchun Li; Meiqi Ma; Mengting Wu; Lixin Ma; Ralph Bock; Ling Chang; Jiang Zhang
Journal:  Front Plant Sci       Date:  2017-08-21       Impact factor: 5.753

  4 in total

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